| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 42.4 |
| Annotation | |
| Source Name | emg21H04 |
| Source Type | genomic |
| Source Sequence | CCTCCTTGGGTCCCTGCATGTGATTATCAGATGACACTAT TAATGAAGCAAAATAATTTAATTGGCTTCTCAGAAGTAGA TTATTTTCAGTCAACAAAATAATTGCTCAATGTTGGATTG TAATCGTCGTGTAAACCAATTTTTCGAGGAGAAATGCAGA AGACAGCCAAAGTAGAGTCTTAGAGGTTTCCCTCTTGCAA GTTATACTTGCTATAGCAGTTTTGAGTCACATCTAACAAG TAAAAACTAGATGGGAAATGGAGAATTTCTCCAAAAACTA ACAAGTAAAAATGTATGTTGCAACAAACTACCTGATAAAG CGACCTGGTTCAAAGCCAGGAACATCTGGTGGACCATATG GATCAAAACGGGCACCAGGTGGAACGCCCCTGTATGAAGA TGAAATAGAATCAATGTTATCTTTGCAACAGAAGAGGGCG GAGAGAGAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGACGTACGGCAGCCCTCCAGGTAAACGAGGATC CCCACCCATTCCACCAAAAAACCGAGGGTCATTAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)5a(ag)18 |
|---|---|
| PCR product (bp) | 211 |
| fwd primer | emg21H04/U |
| fwd primer seq. | acctgataaagcgacctggttcaa |
| rev primer | emg21H04/L |
| rev primer seq. | gatcctcgtttacctggagggct |
| fluor. primer | emg21H04/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acctgataaagcgacctggttcaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 211 | 211 |
| EPL-1 | 213 | 213 |
| LS1151 (S.linneanum) | 210 | 210 |
| LS1934 | 202 | 213 |
| LS4021 (S. incanum) | 207 | 207 |
| Nakate Shinkuro | 202 | 202 |
| Senryo 2 | 202 | 213 |
| Shironasu | 213 | 213 |
| WCGR112-8 | 213 | 213 |
| White Egg | 213 | 213 |
| PI 286106 | 212 | 212 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 42.4 |
| ALF2 | AL09 | 50.4 |
| LWA2010 | LWA_09 | 47.812 |
| LWAE2012 | E_09 | 33.653 |
| N28F2 | E_09 | 36.2 |
| NAF2 | NA09 | 45.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
