| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 76.7 |
| Annotation | |
| Source Name | emg11G04 |
| Source Type | genomic |
| Source Sequence | CCTTACCGATGTAACAGCTGAAAAGATGGACATCATGAAA GGAGACCATAAGAAAGTTAATTTACAATCTTGCGATTAAT TATGGAAGATAATTGTGCATATAACAAACTTCAAAACATG CTAAAGTGGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAAGATGTCCAGATTCAAACGTGTCCGGCAGTAATA AGGAGAATGACTAAAAAAGAGGCTTCAAGCTTCAGCTGCT CAAAAGTCAAAAAATTATGCTAATGTGAGGGATATTCATA CTGTACATTACTGTCTCTTAAACTTTCAAAGATTGTATTC TGTTCTAATATTCTGCTATATCAGAATGGGCTATTAAGTT TGTCACTTATATGTTAATACATGGGTGTAATTCATCTATG CTTCATTCTTAGATTCCTAATCACCTTAGCTTACTCAACG CGTTTGTCATGCCTCATAGTAGAAAAAAACAAGAAAATGA AAGAAGAGATTTTGCATGCTGAAAAGTTAAAAACTTGACA GAGCCAGTGATGATTCCACATATGATCAATGAAGTGAAAT GGACAACAAAGTACGAGAGTATGTCATACCTAGTCGCGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)17 |
|---|---|
| PCR product (bp) | 177 |
| fwd primer | emg11G04/U |
| fwd primer seq. | gatggacatcatgaaaggagacca |
| rev primer | emg11G04/L |
| rev primer seq. | ttattactgccggacacgtttgaa |
| fluor. primer | emg11G04/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attggacatcatgaaaggagacca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 184 | 184 |
| EPL-1 | 180 | 180 |
| LS1151 (S.linneanum) | 186 | 186 |
| LS1934 | 180 | 180 |
| LS4021 (S. incanum) | 198 | 198 |
| Nakate Shinkuro | 180 | 180 |
| Senryo 2 | 180 | 180 |
| Shironasu | 180 | 180 |
| WCGR112-8 | 180 | 180 |
| White Egg | 180 | 180 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 76.7 |
| ALF2 | AL09 | 94.7 |
| LWA2010 | LWA_09 | 75.03 |
| LWAE2012 | E_09 | 59.117 |
| N28F2 | E_09 | 69.1 |
| NAF2 | NA09 | 76.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0037N17_SP6_80912 Chromat_file:LE_HBa_037_N17-SP6 SGN_GSS_ID:80912 (vector and quality trimmed) | 1e-31 |
| EST Name | Species | Strain |
|---|
