| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 16.3 |
| Annotation | |
| Source Name | emf21N06 |
| Source Type | genomic |
| Source Sequence | CCTTGCTAGCAGAAAGCCTATATACATGTTTTGATGGACA TGATCAATTCACAATAATCTTTGGAATTCCATAAGAATAA GCTCTGTACTGCTCTCTTATGTTTTTGGAGTGGTCATAAC TCAACCTGAAAGTCCATTCTCCATGGGTGGGATGCTGAAT AAGTTTAGTGGAGAGAGTGCATTTGCATTGATGAGTCTTC TTGGAGCAAGTATTATGCCTCACAATTTTTACCTCCATTC TTCTATTGTGCAGGTGCCCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCATGTTTCTGTGTTTCTGTGTTTGTGCA CATGTATGCATAAATATTGATCTGTACTTGCAGAATGGAG GCACATCTGTAACTTATAAAACAGTCTGTAACTGACTTAT TGTTATGATAACTATTGGTATGTGAGATTGGGCCATGATA ACTCAAACTAAACTATTGTTCAGTCTATTTTGTTGGTCCA CCCAGTCATGTGTGAATAATTCTACTGCTTTCTTAGATTT TG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)17 |
|---|---|
| PCR product (bp) | 262 |
| fwd primer | emf21N06/U |
| fwd primer seq. | gcattgatgagtcttcttggagca |
| rev primer | emf21N06/L |
| rev primer seq. | ttgagttatcatggcccaatctca |
| fluor. primer | emf21N06/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acattgatgagtcttcttggagca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 270 | 270 |
| EPL-1 | 276 | 276 |
| LS1151 (S.linneanum) | 284 | 284 |
| LS1934 | 276 | 290 |
| LS4021 (S. incanum) | 276 | 276 |
| Nakate Shinkuro | 276 | 276 |
| Senryo 2 | 274 | 276 |
| Shironasu | 276 | 276 |
| WCGR112-8 | 276 | 276 |
| White Egg | 276 | 276 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 16.3 |
| ALF2 | AL09 | 15.5 |
| LWA2010 | LWA_09 | 27.406 |
| LWAE2012 | E_09 | 16.846 |
| NAF2 | NA09 | 25.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0130H12_SP6_334426 Chromat_file:SL_EcoRI_130_H12-SP6 SGN_GSS_ID:351252 (vector and quality trimmed) | 7e-30 |
| TomatoBAC_end | BLASTN | LE_HBa0048J13_T7_63817 Chromat_file:LE_HBa_048_J13-T7 SGN_GSS_ID:63817 (vector and quality trimmed) | 3e-07 |
| EST Name | Species | Strain |
|---|
