| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 111.4 |
| Annotation | |
| Source Name | emf11L21 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCCTAGGTAACGTACCCCTCGT TATCCTCTTGTTTTGGTACTGGTTGGTTAGGTCATTTTGT ACAGATAAACTTAGCAATGACCTAGCAAGATAGAATGTTA TCTGCTCAATATGTACATTTAGTTTTATGTACCTTATGGC TATCATGGAATTGAAGGAAAATCGGATTTTCGAAAAGCCA ACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTAGAATGAATGAATGAGCAATGAGTTGTATTC TAACTATGAAAAGCCCAGGAAATAGAGCCTATAGCCATAT GGCTACCAACTTCCTTAGATTTCATTCATGTTGGCTGATG TGAGTCCTTGAGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)23 |
|---|---|
| PCR product (bp) | 294 |
| fwd primer | emf11L21/U |
| fwd primer seq. | gaagcctaggtaacgtacccctcg |
| rev primer | emf11L21/L |
| rev primer seq. | ggctctatttcctgggcttttcat |
| fluor. primer | emf11L21/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atagcctaggtaacgtacccctcg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 295 | 295 |
| EPL-1 | 295 | 295 |
| LS1151 (S.linneanum) | 295 | 295 |
| LS1934 | 293 | 295 |
| LS4021 (S. incanum) | 340 | 340 |
| Nakate Shinkuro | 295 | 295 |
| Senryo 2 | 291 | 295 |
| Shironasu | 293 | 293 |
| WCGR112-8 | 299 | 299 |
| White Egg | 293 | 293 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 111.4 |
| EW2009 | LG06 | 6.0 |
| LW2010 | E_09 | 104.1 |
| LWA2010 | LWA_09 | 108.978 |
| LWAE2012 | E_09 | 92.832 |
| LWF2_2022 | E_09 | 121.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
