| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 52.1 |
| Annotation | |
| Source Name | emf11H23 |
| Source Type | genomic |
| Source Sequence | CTGGAATATAACACAAACAAGAGTAGATGGAGAATTGTCT CAGCAATTATTTGGTGGATCATATGGAAAGAAAGAAATTC TAGGAGTTCTGAAAACAAGAGCAGCCCTCTGCACAAGATT GAAATGAACTGCATTATCATTTTTTGCTATTGGTACAGTT CAGAGTATATAGATGACCCTGTGGCTATTGTAGACATTTT AGGATCCTTATAAAGATGACGGAGGATCTAGGGATAGTTT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCCTTTTTTTAAAAAATCTTTTGTTTATGCCAGACACAG AGGTGTTGAGATAGGCTATGACTTGGATACCAGATTTCCA AAATTTTACAGTGAATTGAGCTAAGAGTAATAAAATGGTG CAATAATCAAAACATAATAAACAGTTTTAAACAATTCCCA GCTCACCATCAAGATTTAGAAAAACCATAGTAGTATGTAC ATGACCAATGCAGCACATCATCATCGATTAGACACACTAT GAACCAATACAAAGCATGGCTATAAGACCAATCATATCAA AATTAATCGAGGAGAGAACTATTTATGGCCCAAAGTGGAG ATACGGTGGTTAGGCATCCTTAGACAAAAGGTGATCTTTT AGGAGTGGTCATCGCATGTCACCACCTCCCACCTATTCTA AACATTAAATACTTGATGGAGCACATTTACTTGCTATTTA CATGATCCTAATGCATCGGGTACTTCATTTTTCACCAACT AAAAGTTGGAAGAAGGGGGAGCAGGACTATATGACAAGAT CAATTAGGGATAGAATAATTGGATTAAGAAATGAAAATGC TGAAACTCTGGTCTAAGAATGCAAAGCCATTATAGAGGAT GAAGAAACCCAGAAATAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)22 |
|---|---|
| PCR product (bp) | 246 |
| fwd primer | emf11H23/U |
| fwd primer seq. | gttctgaaaacaagagcagccctc |
| rev primer | emf11H23/L |
| rev primer seq. | tctcaacacctctgtgtctggcat |
| fluor. primer | emf11H23/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attctgaaaacaagagcagccctc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 260 | 260 |
| EPL-1 | 250 | 250 |
| LS1151 (S.linneanum) | 234 | 234 |
| LS1934 | 250 | 258 |
| LS4021 (S. incanum) | 307 | 307 |
| Nakate Shinkuro | 250 | 250 |
| Senryo 2 | 249 | 252 |
| Shironasu | 250 | 250 |
| WCGR112-8 | 248 | 248 |
| White Egg | 254 | 254 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 52.1 |
| EW2009 | LG06 | 74.0 |
| LW2010 | E_09 | 57.2 |
| LWA2010 | LWA_09 | 57.482 |
| LWAE2012 | E_09 | 43.191 |
| LWF2_2022 | E_09 | 60.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0093O19_SP6_86340 Chromat_file:LE_HBa_093_O19-SP6 SGN_GSS_ID:86340 (vector and quality trimmed) | 1e-66 |
| TomatoBAC_end | BLASTN | SL_MboI0007M13_SP6_151734 Chromat_file:SL_MboI_7_M13-SP6 SGN_GSS_ID:168561 (vector and quality trimmed) | 9e-49 |
| TomatoBAC_end | BLASTN | SL_EcoRI0008M01_T7_271585 Chromat_file:SL_EcoRI_008_M01-T7 SGN_GSS_ID:288411 (vector and quality trimmed) | 3e-33 |
| TomatoBAC_end | BLASTN | SL_EcoRI0007D21_SP6_289994 Chromat_file:SL_EcoRI_007_D21-SP6 SGN_GSS_ID:306820 (vector and quality trimmed) | 4e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0172B13_SP6_104136 Chromat_file:LE_HBa_172_B13-SP6 SGN_GSS_ID:104136 (vector and quality trimmed) | 4e-11 |
| EST Name | Species | Strain |
|---|
