+Marker Data: emf11D23

Crop eggplant
Population AL2010
Linkage Group E_09
Marker Type SSR
Map Position 53.7
Annotation
Source Name emf11D23
Source Type genomic
Source Sequence CTTCAAGTCTCCATCTCTAATCTTCATCAAGTTCATCTCC AAAGCAAGGATATGTGGGTTTCTTTCACCCATGATACCCA ACCCTCTTTACTCAAAATTACATGATTTAAAGTTGATTTA TTCATGGTCTTATCTGTTATGAAAATCACTACACATTATG TTGAGGTTCATGAAATTATGATTATTTTACCATGTTTTGT GCTATGAATCTAAGATCTATTGTAAGATTTGATAAAGTGT TTTGATATATATTGCTTGAGGGTATTACCAAGTATCTATT GAAGGTTTTTCATTGAATTTACTAGAATACTTCAAGAATC CAATAGTACCCTTAAAATGCCAAACGGAAGCTATTGCGGA TATATCATCTGTAATGCCTCTATTACTAAATAATGTAGTC ACTTTTAAAAAGGATATTCCCTCAAGATGAAGTCAACTCC TACTTCACAACTCTTTGACTTGAAATTTGTGTCGCGAGAG GAATTGAGTTTCATGAATCATAAAAAGAGGGATTTAGGGA GGGGTTTGTCTTAGTGAATTTTATTGTTTGTATGCAATTT ACATGTTAACAAGTCTTAATGATAAGTATTATGTGAGAAC AAAACAAATAAGGAATGAAAAAGGAGTCTTGGGCAGCCAT TTTTGGGCAGCCCTCTTTAAGTTGCTTTTACATAATATAT ATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGT TGCCCAAAGTTAGGCCGGTTTCAAGACTTATACTCATCTT ATAGCACCCTCATATTTGTATATTTGGTCAAAATTACGAA AAAAAAGTCACTTCCCTTGGGCAAAAATCAAGAAGCCCTA TCCTCTGGTAAGTAGATAAATTCTGTCTTGAAATTTTGCA ATGTTTAGTAATTGGGGTATATCTCTTCATATACAACTTT GTTTTTAGTGTGAATATATTTTGGAAAGCTGATTCATATA CCCACAATCTTTGTGCATATGGAAAAATCTGAACCTACTT GTATGATGTCAAAAAAGGCGTGAAACAAGTGGAAGTCCTA G
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153
motif (ta)9(tg)13
PCR product (bp) 198
fwd primer emf11D23/U
fwd primer seq. ggcagccctctttaagttgctttt
rev primer emf11D23/L
rev primer seq. ggatagggcttcttgatttttgcc
fluor. primer
dye
fluor. Primer seq.
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq
Line allele-1 allele-2
AE-P03 206 206
EPL-1 204 204
LS1151 (S.linneanum) 193 193
LS1934 202 202
LS4021 (S. incanum)
Nakate Shinkuro 204 204
Senryo 2 204 204
Shironasu 210 210
WCGR112-8 202 202
White Egg 214 214
Population Linkage Group Position
AL2010 E_09 53.7
LWA2010 LWA_09 55.274
LWAE2012 E_09 44.097
DB Program Definition E-Value
EST Name Species Strain