| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 94.2 |
| Annotation | |
| Source Name | emf11D18 |
| Source Type | genomic |
| Source Sequence | CTATGTTGACTTGGAGCGCTTTTTGTTTGGTTTTTACACA CACATATTTGATTTCAATGATTTTGAAGAATCTATATTCA AATAATTTACTATTAAAATTACATGTTTTAATCTTTGTAT TTTGAGTTACTTTCACATAATTTGAGACAGGGAGAGTGCA TTCTATGTAAGTTTTCAAATACTAATACATCATGATTTAA CTCTAGGTTATGTTGAACGATTAAGCAAAATTATAATTTT GTCCCTTATATATATATATATATATATGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTATGTATGAATGTATGTATGTATGTGAAAAAT AAGTATTGATGCAACCTTATGAACTGCTTAATTTTACAGG CCTGATCATCAAATGCAAGGGATCAGAGATGCACTATCAA GGAAAAGAAGAGAATTTATTGAGCGTGGACTAATACAAAA ATTCAAAAAAGATGAACTCAAAAAGTTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)10(tg)51 |
|---|---|
| PCR product (bp) | 285 |
| fwd primer | emf11D18/U |
| fwd primer seq. | tgagacagggagagtgcattctatg |
| rev primer | emf11D18/L |
| rev primer seq. | gcagttcataaggttgcatcaatac |
| fluor. primer | emf11D18/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agagacagggagagtgcattctatg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 190 | 190 |
| EPL-1 | 203 | 203 |
| LS1151 (S.linneanum) | 224 | 224 |
| LS1934 | 192 | 198 |
| LS4021 (S. incanum) | 221 | 221 |
| Nakate Shinkuro | 203 | 203 |
| Senryo 2 | 200 | 203 |
| Shironasu | 200 | 200 |
| WCGR112-8 | 225 | 225 |
| White Egg | 192 | 192 |
| PI 286106 | 193 | 193 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 94.2 |
| ALF2 | AL09 | 114.5 |
| EW2009 | LG06 | 24.8 |
| LW2010 | E_09 | 87.1 |
| LWA2010 | LWA_09 | 92.196 |
| LWAE2012 | E_09 | 75.106 |
| LWF2_2022 | E_09 | 102.6 |
| N28F2 | E_09 | 84.1 |
| NAF2 | NA09 | 94.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| SGN_marker | BLASTN | SSR508 [ssr] | 3e-06 |
| TomatoBAC_end | BLASTN | LE_HBa0054M04_SP6_12486 Chromat_file:LE_HBa_054_M04-SP6 SGN_GSS_ID:12486 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
