| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 119.0 |
| Annotation | |
| Source Name | eme25D01 |
| Source Type | genomic |
| Source Sequence | CCTGCGCATAGTGCAAGATTTAATGCACCCGGCTGCCCTT TTTAAGTTCGAATACACTCAAAAGTTTTACAAGGTATGGT GGACTTGCATCTTATATTAGTTCATAAGTTAGTGGGAGGG GGAACATCATTAAGTAGGCATATTTAAAAACTACTTATCA AAAAGAGAGGTAGCGTCGCCAAAACAGTCCTAAAAAGGCA GGGTCTTGCAAAACATGACGACAGAAAAGGTAAGAATATG ATTCCGAAAAGAGAGGAAAAACTTCCACCTAGCATGAGGT AGCTACTTAAGTCCCAACCAAAATCGTAGAGGCTCTAATA TCATTTGAAAAGAGAATTTTTTAAACACACACACACACAC ACAGAGAGAGAGAGAGAGAGAAGAAAATCTAATGAAAATT GGCGAAACAAACAAGAAAACTACATGTTAAGCTACACAAA GTGAAGGAAAGTTTTTTAATTCTTTAGAATTTCGAAATTA CTATCACACAAGAATTAAGAATGTCATTAAGAATATTCTT AGTGATTGTATTAAATTTTCTACTTGGTTTGTTGTGTCAC TATCACACTCCACATCCTTCAGTGAATGTCAGAGGCGATG GCAAAAACTGATCCGAGCAATCACCGGTGCATAAATAAGC AGGATTTATTCCACATATAATCCTAAAAGGATTTGCACGG G |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)9(ag)9 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | eme25D01/U |
| fwd primer seq. | agtcccaaccaaaatcgtagaggc |
| rev primer | eme25D01/L |
| rev primer seq. | ttcactgaaggatgtggagtgtga |
| fluor. primer | eme25D01/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agtcccaaccaaaatcgtagaggc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 311 | 311 |
| EPL-1 | 298 | 298 |
| LS1151 (S.linneanum) | 317 | 317 |
| LS1934 | 298 | 298 |
| LS4021 (S. incanum) | 337 | 337 |
| Nakate Shinkuro | 307 | 307 |
| Senryo 2 | 298 | 298 |
| Shironasu | 315 | 315 |
| WCGR112-8 | 307 | 307 |
| White Egg | 322 | 322 |
| PI 286106 | 315 | 315 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 119.0 |
| EW2009 | LG06 | 0.5 |
| LW2010 | E_09 | 111.2 |
| LWA2010 | LWA_09 | 116.081 |
| LWAE2012 | E_09 | 100.144 |
| LWF2_2022 | E_09 | 128.6 |
| N28F2 | E_09 | 112.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
