| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 42.4 |
| Annotation | |
| Source Name | eme08B05 |
| Source Type | genomic |
| Source Sequence | AACAAAATAATTGCTCAATGTTGGATTGTAATCGTCGTGT AAACCAATTTTTCGAGGAGAAATGCAGAAGACAGCCAAAG TAGAGTCTTAGAGGTTTCCCTCTTGCAAGTTATACTTGCT ATAGCAGTTTTGAGTCACATCTAACAAGTAAAAACTAGAT GGGAAATGGAGAATTTCTCCAAAAACTAACAAGTAAAAAT GTATGTTGCAACAAACTACCTGATAAAGCGACCTGGTTCA AAGCCAGGAACATCTGGTGGACCATATGGATCAAAACGGG CACCAGGTGGAACGCCCCTGTATAAAGATGAAATAGAATC AATGTTATCTTTGCAACAGAAGAGGGCGGAGAGAGAGAGA AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTACGG CAGCCCTCCAGGTAAACGAGGATCCCCACCCATTCCACCA AAAAACCGAGGGTCATTAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)5a(ag)16 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme08B05/U |
| fwd primer seq. | acctgataaagcgacctggttcaa |
| rev primer | eme08B05/L |
| rev primer seq. | gatcctcgtttacctggagggct |
| fluor. primer | eme08B05/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ACGGTGGAACGCCCCTGTATAAAGAT |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 149 | 149 |
| EPL-1 | 151 | 151 |
| LS1151 (S.linneanum) | 148 | 148 |
| LS1934 | 151 | 151 |
| LS4021 (S. incanum) | 145 | 145 |
| Nakate Shinkuro | 139 | 139 |
| Senryo 2 | 151 | 151 |
| Shironasu | 151 | 151 |
| WCGR112-8 | 151 | 151 |
| White Egg | 151 | 151 |
| PI 286106 | 149 | 149 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 42.4 |
| LWA2010 | LWA_09 | 47.812 |
| LWAE2012 | E_09 | 33.653 |
| N28F2 | E_09 | 36.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
