| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 39.7 |
| Annotation | |
| Source Name | emd03C01 |
| Source Type | genomic |
| Source Sequence | CCTATTTTTCCATTTTAGTCGTAATTAACCTATGTTCTCC CATTTCTTGAGATATTATAGCCAAAACAACCATAATTATA TTGTGTTTCTTATTTTGACAGTTAGGCAGTATTTAGAGGT AGTCATATAGGGTAAAACATGCATGGACTGATTTAGAGTA TGTGAACTCGCCTTCTAGGTAGGCTAGGCTTTCCTTACCT CTAGACTGAGCTAAAATGCATGTATATTGGGAGTTGTTTG TTGGAAGTCCTGAGTAAGATATATATATGTGTGTGTGTGT GTGTGTGTGTGAAGCTGATTGTTAGTTATATTTCTTGCTA TGCATTTAAACACTGTTGTCATGATTTGCTAACACCTGTC GTCCTGGATATTCTGTGTACTTAGCATATGAGGTAACTAC CGTTATTATGGGATACTTGTGGTTGTTCTGGACTGTACTA GGTGTGACCACTATAGTGGCTGAGTTCTAGCACTGTATAA CTGTCACGACCCAAAAATTTGGGAGTGATGGCACTCGTCT TATCCCACAAAGACAAGTCAGCCTACAACCTAGCTACAAC ATTAAGAATACAAAATTATAATAAAAGTGAAAGTTTAATT GCGGATAATAAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)4(tg)12 |
|---|---|
| PCR product (bp) | 274 |
| fwd primer | emd03C01/U |
| fwd primer seq. | gggagttgtttgttggaagtcctg |
| rev primer | emd03C01/L |
| rev primer seq. | ccaaatttttgggtcgtgacagtt |
| fluor. primer | emd03C01/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ACGGGAGTTGTTTGTTGGAAGTCCTG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 270 | 270 |
| EPL-1 | 282 | 282 |
| LS1151 (S.linneanum) | ||
| LS1934 | 270 | 270 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | ||
| Senryo 2 | ||
| Shironasu | ||
| WCGR112-8 | 270 | 270 |
| White Egg | 294 | 294 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 39.7 |
| ALF2 | AL09 | 48.1 |
| EW2009 | LG06 | 88.2 |
| LWA2010 | LWA_09 | 45.018 |
| LWAE2012 | E_09 | 32.726 |
| NAF2 | NA09 | 43.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0031D15_T7_139554 Chromat_file:LE_HBa_031_D15-T7 SGN_GSS_ID:156385 (vector and quality trimmed) | 1e-19 |
| TomatoBAC_end | BLASTN | LE_HBa0219N03_SP6_396652 Chromat_file:LE_HBa_219_N03-SP6 SGN_GSS_ID:413846 (vector and quality trimmed) | 7e-18 |
| TomatoBAC_end | BLASTN | LE_HBa0219N02_SP6_396648 Chromat_file:LE_HBa_219_N02-SP6 SGN_GSS_ID:413842 (vector and quality trimmed) | 7e-18 |
| TomatoBAC_end | BLASTN | SL_MboI0139O11_T7_361678 Chromat_file:SL_MboI_139_O11-T7 SGN_GSS_ID:378889 (vector and quality trimmed) | 7e-18 |
| TomatoBAC_end | BLASTN | SL_MboI0112C20_T7_197048_2 Chromat_file:SL_MboI_112_C20-T7 SGN_GSS_ID:376742 (vector and quality trimmed) | 7e-18 |
| EST Name | Species | Strain |
|---|
