| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 65.5 |
| Annotation | |
| Source Name | emd01G01 |
| Source Type | genomic |
| Source Sequence | ACTGGTCTGACTGCAGCAGGTAAAGAAGTACTAAATCTAC TTGTTAAAGCTGCAACAATCATGGACAAGATCTTTTATGT GCAGGTATAATCACAGTGTCTTTTAGTGAGAGTTCAAATT CTGATGTATAAAAGGGTTGATTAAGTTCATATCAGTTTTG GATAAGCAAGTGGTCTACTATGTTTCTGTAAGTTTGTTAC ATCTTTAGTTGCTGCTACCACAGGCATTATTTTTTGATGA AGCAAGAAGTCCAATCCCCCCCCCCTCCTCTTCCTCCTCC TCTTTGTGTGTGGTTGTTGACGGGGATGTAAAAATGTTGA GGACATCAAGACATAGCTATAGTAGATGCATTATCATCAC TGACATCACTTCTAACATGCTGCCGTCATCTTCATTATGG AAAGAATGTGCT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (cct)3ctt(tg)4 |
|---|---|
| PCR product (bp) | 186 |
| fwd primer | emd01G01/U |
| fwd primer seq. | ctttagttgctgctaccacaggca |
| rev primer | emd01G01/L |
| rev primer seq. | tgacggcagcatgttagaagtgat |
| fluor. primer | emd01G01/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ACTTTAGTTGCTGCTACCACAGGCA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 192 | 193 |
| EPL-1 | 191 | 191 |
| LS1151 (S.linneanum) | ||
| LS1934 | 192 | 192 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 191 | 191 |
| Senryo 2 | 191 | 191 |
| Shironasu | ||
| WCGR112-8 | ||
| White Egg |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 65.5 |
| ALF2 | AL09 | 82.4 |
| LWA2010 | LWA_09 | 66.677 |
| LWAE2012 | E_09 | 51.506 |
| NAF2 | NA09 | 65.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
