| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_09 |
| Marker Type | SSR |
| Map Position | 85.1 |
| Annotation | |
| Source Name | SHT02N01W |
| Source Type | EST |
| Source Sequence | GGGGAAATAGCTCACAATCGTCTCTCACTCTCTTCTCACT AATGGAGCTATCACTTTCATCTCATCGTTTCATCAGCTCT TCATCATCATCATCATCATCATCATCACCATCACTACCTT CTCTATTCAATTCAAGAATTAAGGTTTCAGAAACCCCTCT CTTCTCTTTAAGAAATTATCAACAAAAGTTACAGCTTTTC ACTGGATTACACCACAAACTACCTACTTCAATGGAACCCC AAACAACGATTCCTCATGCTTTTGATAATGGGTCTTCCAT AACTTCCTCTGAAACAGGTCGAATTGGGGAAGTGAAGAGG ACTACGAAAGAGACGAATGTGCATGTGAAGATAAACTTGG ATGGAACAGGTGCTGCGGAGAATAGTTCTGGCATTCCATT TCTTGATCATATGTTGGATCAACTCGCTTCACATGGGTTG TTCGACGTGCATGTTAANNNNNATGAAATATCTATTACCG CAAAGATTCAGATTCTTTGAGCAGAGTAGTTTACTGCACT GGTATTTACCAGATATATCATGACTATTGAAGTTCTGTAG TAGAAGAAGGTGGATTGAAATACATCAAATGCTTCTCTAG CTTTTTTAAGAAATCATTTTGATGTCAACGAATGCTACAA GATGAATGGAATTGCAGGCAGCTACTTCCAGTGTTTCTGT ATTTATACTTCAAAAAGATGTTGGAGGTTTACTGGTGATG GAGGCATTTGGCTTTTGATTTGGTTATAAACCTTTTTTTT TAAGATAACCAATGATCATTTGTATGTTTTGTGACCTCTG TTCTTTTAAGTTGCCTATTACTGGGATGATATATGAATAA GCGGATGAAGTCTCTCTCCTTTGGAATGTCTGGCACTGTC TTTTCCAGCAAAACATGAGATGTAACTTGATGCTATGCCA AGTTTAAGCATTTTTTTTCCG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tca)9 |
|---|---|
| PCR product (bp) | 245 |
| fwd primer | ecm081/U |
| fwd primer seq. | ggggaaatagctcacaatcgtctc |
| rev primer | ecm081/L |
| rev primer seq. | tgtttggggttccattgaagtagg |
| fluor. primer | ecm081/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agggaaatagctcacaatcgtctc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 242 | 242 |
| EPL-1 | 242 | 242 |
| LS1151 (S.linneanum) | 249 | 249 |
| LS1934 | 239 | 239 |
| LS4021 (S. incanum) | 249 | 249 |
| Nakate Shinkuro | 243 | 243 |
| Senryo 2 | 242 | 242 |
| Shironasu | 242 | 242 |
| WCGR112-8 | 242 | 242 |
| White Egg | 242 | 242 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_09 | 85.1 |
| LW2010 | E_09 | 76.5 |
| LWA2010 | LWA_09 | 82.464 |
| LWAE2012 | E_09 | 66.307 |
| LWF2_2022 | E_09 | 91.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
