| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 43.6 |
| Annotation | |
| Source Name | emh11J10 |
| Source Type | genomic |
| Source Sequence | ACATATAAGTTACCAATTTTGAATCCACACCCAAGGTCCA CAACTTACTTAAACGAATAAACTTTCATGTTTTTCCTTCA TTATAACACTTACTAACTCACATACAATCTTTAATTTTGC TCAAAAGAAGAGAAAAATACATTTACCTTCACAACCCTTC CACAACTTTAAATCTTAAATTCTGAATTTCTGAGCATTTT CCCGACAAATCAATGCTTCTATGATGCTTAGAGGATCCAA TATAACAAGCTAGTAGCATCAAATCGGAAGAATAAGCAAA AAAATTGATTTTTTTCCTTTTTACTGTAGCAACCCGAAAG GGTTGCTACAATGTTTTCAGGATGTTTCTTTTTTCTAAGT GTGGGAAGCTTTGTTTTGTTCTTGAACAATATAACATGCT TACACACACACACACACACACACACATATATAGATAGAAA GGGAGAAAGGGTCTTGTGGAACATATCATACATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)12a(ta)3 |
|---|---|
| PCR product (bp) | 280 |
| fwd primer | emh11J10/U |
| fwd primer seq. | tgaatttctgagcattttcccgac |
| rev primer | emh11J10/L |
| rev primer seq. | gttccacaagaccctttctccctt |
| fluor. primer | emh11J10/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agaatttctgagcattttcccgac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 274 | 274 |
| EPL-1 | 277 | 277 |
| LS1151 (S.linneanum) | ||
| LS1934 | 277 | 277 |
| LS4021 (S. incanum) | 272 | 272 |
| Nakate Shinkuro | 276 | 276 |
| Senryo 2 | 276 | 276 |
| Shironasu | 273 | 273 |
| WCGR112-8 | 277 | 277 |
| White Egg | 276 | 276 |
| PI 286106 | 275 | 275 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 43.6 |
| ALF2 | AL08 | 54.7 |
| LWA2010 | LWA_08 | 46.174 |
| LWAE2012 | E_08 | 46.885 |
| N28F2 | E_06 | 47.8 |
| NAF2 | NA08 | 67.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
