| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 28.0 |
| Annotation | |
| Source Name | emh11E04 |
| Source Type | genomic |
| Source Sequence | TGGCCTTGCTAGCAGAAGCACTCCTCCATAACAATTATCA CTTGCATCTGATTCTACTATGTAGTCAAATTTTTTATTTT CATCTGGAAAGCATAATTTTGGTAAATTTCTACAATTTTC TTTTATTTTCTGGACTTGCTCTTGATCTTTTTTATCATAA TTATATTCAACATCCTTTTTTAATTTTTTCTGCAATGGTC TTAAATATTCCGCTAATTTAGGTATATACTCTCTAACTTG GTTAACTAATCCTAAAAAAGATTGTAATTTCTTTTTTGTA TCTAATATTTCATCTGTGTTTATTATCTTTTGTACCACCA ATTCCAGAAAATAGTGATAAAACATTAATATCATTAGGAT ACAAGTCTTTCAACACCAATAAATGTTATCCTCCTTGTCG AACTAATACAAATTTTTTGATTAATGTATCATGTTTAAAA TTATTCAAAAAAGAAAAGAAAGTAAGTTGATGGACAGTTT ACTTCACCTAGAATGCATTACCAAGTGACTTGTATCTATT TGTCCTACTTATACCACCTCCATGAGTATGATTCTGTGGA AACCCCAATATCATTTCAAATTTGTAGTCTCTACGGGTAT GACAGCTTTAAAATTAGATAAATAAGGCAATAAAGTAAAA TTTTCTTATAAGGGTTCCCTCTCCTCTTTATTTCTCTCTC TCTCCTCTCCCTCTCTCTCCCTCCCTCTCTCTCTCTCTCT CTATCTGTCTGTCTATCCCATGCAAGGTAGAATTAGGTAA TGTGGATTGCCCCTTTAATACTACCTATGTCTCATGCCCT ATGTTTAAAATTGATTTTATCCATGAACTTTTAGTTTATT ACTAGTTACAAAAATCCATGCTACCACAGGTCCAACATAT ATTTTTTTATCTCGATTTATGTAATACTGATAATTTTTTT ATATATATTTTTAAAAATTGGAAGTTGTTAATTATTGCAA CTTATAATATATTTTATGTTATTCATAAATAATATGTGTT ACTTATTTTATTCCAGTTTATGTTGCATATATAAAATTTT GAGAATCAATCAATATTTTATTTATTTTTTAAATTTTTAA TTATTGAAATTTATAGTTTTTCTCTGATTTGTTAGCTTTT TGTAATTTATGATTTGATAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)6ctctccc(tc)4cctccc(tc)8 |
|---|---|
| PCR product (bp) | 205 |
| fwd primer | emh11E04/U |
| fwd primer seq. | tgagtatgattctgtggaaacccc |
| rev primer | emh11E04/L |
| rev primer seq. | ccttgcatgggatagacagacaga |
| fluor. primer | emh11E04/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agagtatgattctgtggaaacccc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 210 | 210 |
| EPL-1 | 210 | 210 |
| LS1151 (S.linneanum) | 263 | 263 |
| LS1934 | 208 | 208 |
| LS4021 (S. incanum) | 210 | 210 |
| Nakate Shinkuro | 210 | 210 |
| Senryo 2 | 210 | 210 |
| Shironasu | 210 | 210 |
| WCGR112-8 | 210 | 210 |
| White Egg | 208 | 208 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 28.0 |
| LW2010 | E_08 | 37.8 |
| LWA2010 | LWA_08 | 31.191 |
| LWAE2012 | E_08 | 32.139 |
| LWF2_2022 | E_08 | 37.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0037I08_SP6_240202 Chromat_file:SL_EcoRI_037_I08-SP6 SGN_GSS_ID:257028 (vector and quality trimmed) | 1e-26 |
| TomatoBAC_end | BLASTN | SL_EcoRI0102H14_SP6_313310 Chromat_file:SL_EcoRI_102_H14-SP6 SGN_GSS_ID:330136 (vector and quality trimmed) | 1e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0146J18_T7_72275 Chromat_file:LE_HBa_146_J18-T7 SGN_GSS_ID:72275 (vector and quality trimmed) | 1e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0216M24_T7_391488 Chromat_file:LE_HBa_216_M24-T7 SGN_GSS_ID:408682 (vector and quality trimmed) | 5e-23 |
| TomatoBAC_end | BLASTN | SL_MboI0141E15_T7_362705 Chromat_file:SL_MboI_141_E15-T7 SGN_GSS_ID:379916 (vector and quality trimmed) | 2e-22 |
| EST Name | Species | Strain |
|---|
