| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 34.0 |
| Annotation | |
| Source Name | emg11D19 |
| Source Type | genomic |
| Source Sequence | AATTCTAAACCAACTATTTAGGGTGTTTCTTGTATAAATT GGTCCTTTACTTGCTACAGCTAGAAAGGTGCACAGCTAAA AAGTGATGGTGCTTGATACATAGGACCATTCCTCTTATTT CATGGTAGGTGGAGACAGAACCAGATCATTTATTAGATAT TTGCACTAGCTGCCCTGTGTCTTCTTACTCTGTGTGTGTG TGTGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAA ACCTGGTCATAGGCTCTTTGCAGGAAAGCTGAAGGAATTA TGCAGAAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)7(ag)10aa(ag)21gg(ag)4 |
|---|---|
| PCR product (bp) | 184 |
| fwd primer | emg11D19/U |
| fwd primer seq. | tcatggtaggtggagacagaacca |
| rev primer | emg11D19/L |
| rev primer seq. | ctgcaaagagcctatgaccaggtt |
| fluor. primer | emg11D19/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-acatggtaggtggagacagaacca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 185 | 185 |
| EPL-1 | 187 | 187 |
| LS1151 (S.linneanum) | 153 | 153 |
| LS1934 | 162 | 162 |
| LS4021 (S. incanum) | 186 | 186 |
| Nakate Shinkuro | 186 | 186 |
| Senryo 2 | 186 | 186 |
| Shironasu | 186 | 186 |
| WCGR112-8 | 183 | 183 |
| White Egg | 160 | 160 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 34.0 |
| ALF2 | AL08 | 39.2 |
| EW2009 | LG07 | 37.2 |
| LW2010 | E_08 | 39.6 |
| LWA2010 | LWA_08 | 35.185 |
| LWAE2012 | E_08 | 35.809 |
| LWF2_2022 | E_08 | 41.5 |
| NAF2 | NA08 | 54.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
