| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 10.7 |
| Annotation | |
| Source Name | emf21I02 |
| Source Type | genomic |
| Source Sequence | CTTAATTCTTCACCAACTCGAAATTTACATAATAAGAATT CAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCT CTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGC GCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTAC TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGA ATCAGCGGGGAAAGAAGACCCTGTTGAGCTGGACTTTCTG CATTGATGGACAGACCTTCTATCTATAGAGGATTTTATCA CTCTCAGAGGTTGCATTTAGTCTCAAATGAATTTGATCTA GCTGAGGATGCTGTACGTTAAAAGTAATGTTTAATGTGGC TTTGAGGTTTATTATTTATCATGATGTATTCCACTCTCTT AACCTTTTCCTACCTTTTCATTAGACTACAATGTAGCACT GTTAATTTAACTAATTGAGTTGTTTTAGCATAAATGAGAA CTTATGAAGATACAAATCGTGCATTTCTCAAATCAAAAGG GAAGAGGAGACTTGCTACTAAACTTGAGTTGTTTAGTGTC AGGTTTTATGTTCTTATTTGAATTTGGGACAATTTTAGAT GCGTTTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTAAGTGATTTTGACTGACTAAAATATAATGC AGGAGCCTGTGAAATTGATATTGGAACCTATGAAATTGAT GGAGTTAGTTATCTGCCGCTCATGTTTTCTTTTTGATTCT TTTTTTGGGTAGATTGAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)20 |
|---|---|
| PCR product (bp) | 201 |
| fwd primer | emf21I02/U |
| fwd primer seq. | cgtgcatttctcaaatcaaaaggg |
| rev primer | emf21I02/L |
| rev primer seq. | tcaatttcacaggctcctgcatta |
| fluor. primer | emf21I02/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agtgcatttctcaaatcaaaaggg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 214 | 214 |
| EPL-1 | 208 | 208 |
| LS1151 (S.linneanum) | 216 | 216 |
| LS1934 | 202 | 202 |
| LS4021 (S. incanum) | 212 | 212 |
| Nakate Shinkuro | 212 | 212 |
| Senryo 2 | 210 | 214 |
| Shironasu | 218 | 218 |
| WCGR112-8 | 214 | 214 |
| White Egg | 202 | 202 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 10.7 |
| EW2009 | LG07 | 12.7 |
| LW2010 | E_08 | 13.6 |
| LWA2010 | LWA_08 | 11.265 |
| LWAE2012 | E_08 | 10.258 |
| LWF2_2022 | E_08 | 12.5 |
| NAF2 | NA08 | 20.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0135O15_T7_382385 Chromat_file:SL_MboI_135_O15-T7 SGN_GSS_ID:399579 (vector and quality trimmed) | 1e-106 |
| TomatoBAC_end | BLASTN | SL_MboI0135O02_SP6_382358 Chromat_file:SL_MboI_135_O02-SP6 SGN_GSS_ID:399552 (vector and quality trimmed) | 1e-106 |
| TomatoBAC_end | BLASTN | SL_MboI0135J19_SP6_382152 Chromat_file:SL_MboI_135_J19-SP6 SGN_GSS_ID:399346 (vector and quality trimmed) | 1e-106 |
| TomatoBAC_end | BLASTN | SL_MboI0135E21_SP6_381916 Chromat_file:SL_MboI_135_E21-SP6 SGN_GSS_ID:399110 (vector and quality trimmed) | 1e-106 |
| TomatoBAC_end | BLASTN | SL_MboI0134O21_T7_381629 Chromat_file:SL_MboI_134_O21-T7 SGN_GSS_ID:398823 (vector and quality trimmed) | 1e-106 |
| EST Name | Species | Strain |
|---|
