| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 35.0 |
| Annotation | |
| Source Name | emf21H22 |
| Source Type | genomic |
| Source Sequence | CTTGGATGATGAAAGAAGTGATTGAAATAAAATACAACTT TGCATAACAGTGAATAAATACACAAGATGAACAAGACTAA GGAGTGCATTCAAGAGAGAGAGAGAGAGAGAGAGAGAAAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGA ACTGGGCTAAAGACAGGTTGAAGAAGTTGAATGTGGATCT AAGCACTTCTACGCTTTTTGTCTAATAGTTATAGTTTTTA ATTCTAGAAAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)12aa(ag)18 |
|---|---|
| PCR product (bp) | 126 |
| fwd primer | emf21H22/U |
| fwd primer seq. | cacaagatgaacaagactaaggagtgc |
| rev primer | emf21H22/L |
| rev primer seq. | cttcttcaacctgtctttagccca |
| fluor. primer | emf21H22/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atcaagatgaacaagactaaggagtgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 135 | 135 |
| EPL-1 | 125 | 125 |
| LS1151 (S.linneanum) | 127 | 127 |
| LS1934 | 143 | 143 |
| LS4021 (S. incanum) | 90 | 90 |
| Nakate Shinkuro | 132 | 132 |
| Senryo 2 | 129 | 131 |
| Shironasu | 137 | 137 |
| WCGR112-8 | 137 | 137 |
| White Egg | 133 | 133 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 35.0 |
| ALF2 | AL08 | 40.7 |
| EW2009 | LG07 | 39.9 |
| LW2010 | E_08 | 42.0 |
| LWA2010 | LWA_08 | 36.809 |
| LWAE2012 | E_08 | 37.963 |
| LWF2_2022 | E_08 | 43.8 |
| N28F2 | E_08 | 56.2 |
| NAF2 | NA08 | 58.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
