| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 30.0 |
| Annotation | |
| Source Name | emf11P07 |
| Source Type | genomic |
| Source Sequence | ATTTCAGGCTGATGTATGTCACGCTTATCAATTACTGAAG AAAGGTGGTGTCAAAGATGAGAACATCATTGTATTCATGT ACGATGATATGCTAACAATACTATGAATCCTAGACCTGGG GTCATCATCAATAATCCACATGGACAAGATGTTTACAAAG GTGTTCCTAAGGTTAGTCTATTTTTTTTTTTCTCTTTTCA ACCAATTCAATCATTCGAAAATATTTTTTCAAGATTAGAT ATGCGGTGATCATGATGGCCAGGGTTATTATTATTATTTT TTGTTTGTTGAGTCAGGATTATGTAGGTGAAGATGTTAAT GCTGAAAACTTTTTCAATGTTATCCTTGCAAACAAAAGTG GTATCACGGGGGGAAGTGGTAAAGTTTTAAATAGTGGTCC AAATGACCATATTTTCATCTACTATACAGATCATGGTGGC CCTGGCATTGTTTGTAAGTGCTTCGATCCTCATCTCTCAC ACACACACACACACACACACATATATATATGTTCCATATC AAAAATACTCATCACAATACTTATGTGTTTATCTCATGGT TTTCAAATGAACAGCAATGCCAACTGGAGTTGTTTACGCA AATGATTTGATTGATGTGTTGAAAAAGAAGCATGCTTCTG GAACATATAGTAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)3(ac)11a(ta)4 |
|---|---|
| PCR product (bp) | 152 |
| fwd primer | emf11P07/U |
| fwd primer seq. | ctggcattgtttgtaagtgcttcg |
| rev primer | emf11P07/L |
| rev primer seq. | acaactccagttggcattgctgtt |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 158 | 158 |
| EPL-1 | 158 | 158 |
| LS1151 (S.linneanum) | ||
| LS1934 | 172 | 172 |
| LS4021 (S. incanum) | 173 | 173 |
| Nakate Shinkuro | 158 | 158 |
| Senryo 2 | 158 | 158 |
| Shironasu | 173 | 173 |
| WCGR112-8 | 158 | 158 |
| White Egg | 173 | 173 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 30.0 |
| LWA2010 | LWA_08 | 32.465 |
| LWAE2012 | E_08 | 33.194 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0118F05_T7_40569 Chromat_file:LE_HBa_118_F05-T7 SGN_GSS_ID:40569 (vector and quality trimmed) | 4e-72 |
| TomatoBAC_end | BLASTN | SL_EcoRI0010A08_SP6_290682 Chromat_file:SL_EcoRI_010_A08-SP6 SGN_GSS_ID:307508 (vector and quality trimmed) | 3e-17 |
| TomatoBAC_end | BLASTN | SL_EcoRI0017L24_T7_276365 Chromat_file:SL_EcoRI_017_L24-T7 SGN_GSS_ID:293191 (vector and quality trimmed) | 4e-16 |
| TomatoBAC_end | BLASTN | SL_EcoRI0060O09_T7_251046 Chromat_file:SL_EcoRI_060_O09-T7 SGN_GSS_ID:267872 (vector and quality trimmed) | 4e-16 |
| TomatoBAC_end | BLASTN | SL_EcoRI0060O08_T7_251044 Chromat_file:SL_EcoRI_060_O08-T7 SGN_GSS_ID:267870 (vector and quality trimmed) | 4e-16 |
| EST Name | Species | Strain |
|---|
