| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 27.8 |
| Annotation | |
| Source Name | emf01O07 |
| Source Type | genomic |
| Source Sequence | CTTAAGATCTAACTGTTGACTGCTTCTGCTGTAGTTAGCA TTGTTTGATATGATCTTTCTTCAAAAAGAGAGCTGATATA CTTTAACAGTAATGTTAGAACCCGTATTTTCGTGTGTTGG AGTAGTTACAGAAATGTGGGACCAGTGTTGCAAGTTTAGG AAAAATAATTCGGGACTTAAATGTACTCTTGAAAAGTTTG AGAACTCAAGTTGGAAAAATTGTTAAGAGGTGTGTTTATA TCTTATATATATATGCTCACATGTACACCTACAAGACCAT GGGTTAATTTCTTTCACAATAAAATATTTTAGTTAAATAC CAAAAATCTAGAACCTTAAATGGTGTTAAATTTGGATTGG AACAAGTGCACAAGTGGGGTCTTGTGGGTTATATATATAT ATATATATATGTGTGTGTGTGTGTGTGTGTTTGTGTGTGT TCCCTTATTCTTCATCAAGTAGAGCAAATTTGACACTTAG AAAAAAAAGAGCCATCTTCAAGAACAAGAGAGAACAAGTC TCGGGTTTGCTACAGTGTTTCCCACAAAAATTTTAAATTT TGATTCTCTTGCTATTTTGATGCTTTAAGTCTAGTCTATT GGTCCCCCTAAGCATCGTAGAAGCGTTGGTTGGTTGAGAA ATCACTTGGAAATTCAGTTTTGGCGATTTGAAATTCTTGA GGGGTTGACAAGGTATGTTAATTTTCTTTTGGTTTGAGTT AAATATAAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)10(tg)10tt(tg)4 |
|---|---|
| PCR product (bp) | 291 |
| fwd primer | emf01O07/U |
| fwd primer seq. | gaacaagtgcacaagtggggtct |
| rev primer | emf01O07/L |
| rev primer seq. | tccaagtgatttctcaaccaacca |
| fluor. primer | emf01O07/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atacaagtgcacaagtggggtct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 294 | 294 |
| EPL-1 | 294 | 294 |
| LS1151 (S.linneanum) | 297 | 297 |
| LS1934 | 296 | 296 |
| LS4021 (S. incanum) | 273 | 273 |
| Nakate Shinkuro | 294 | 294 |
| Senryo 2 | 294 | 294 |
| Shironasu | 294 | 294 |
| WCGR112-8 | 295 | 295 |
| White Egg | 300 | 300 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 27.8 |
| LW2010 | E_08 | 37.8 |
| LWA2010 | LWA_08 | 30.72 |
| LWAE2012 | E_08 | 31.702 |
| LWF2_2022 | E_08 | 37.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
