| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 28.1 |
| Annotation | |
| Source Name | emf01N16 |
| Source Type | genomic |
| Source Sequence | CTGTTGATTTTACAGAAAAGACATCAGCCAGTTGACCTGC AATTAATAGGCAGAGTGTCCGCAAAGGTGATCCTGCTACC AACTGTCGAAGTGCCATTTGCTTCTGTTTCTACATAGAAC TACAATTACACATGAAATCAAAATATAATGATAGAAAGAT AAATATTTTTATATATACACACAAACACTGTGCGCGCACA CACATGTATAAGAGGGAGAGAGGGAGGGAGGGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGCTGG GGGTAAAAGGCAACTAAGAACCAGACAGACCTGATCACCA AGTTGTGCAGCGAGAACAAGAGTTGGCCGCCACAATTGCC CCTCTTGTGCACTTTGTAATGCTTCTTTCTTTCTTCCAGA TACTAGAAGACTTTGAACCTCAGAAGCTTATTTATATGTT TGATATGTTTTACCTAGGAAAAACGAGAGAGCATGATGGC TGTATTGAAACTGAAATTTCTAGACAGCATGTGTTGTTGA TGTTGTTGTGTACTTTTCTTATTTATTATGAGTTGTTTCT ATTCTTGGTTTATTGTACTATGAGGTATTACATGTGTAGT AAACAAAAGTGCGATTGGCAATGATATAAACACGCTGCTC TGTTGCTTTTACAGTCCACAACGATAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3t(ac)3aaacactgt(gc)3(ac)3atgtataagaggg(ag)3ggagggaggg(ag)19 |
|---|---|
| PCR product (bp) | 284 |
| fwd primer | emf01N16/U |
| fwd primer seq. | gcaaaggtgatcctgctaccaact |
| rev primer | emf01N16/L |
| rev primer seq. | aactcttgttctcgctgcacaact |
| fluor. primer | emf01N16/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acaaaggtgatcctgctaccaact |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 286 | 286 |
| EPL-1 | 284 | 284 |
| LS1151 (S.linneanum) | 298 | 298 |
| LS1934 | 284 | 284 |
| LS4021 (S. incanum) | 273 | 273 |
| Nakate Shinkuro | 282 | 282 |
| Senryo 2 | 284 | 284 |
| Shironasu | 284 | 284 |
| WCGR112-8 | 285 | 285 |
| White Egg | 286 | 286 |
| PI 286106 | 286 | 286 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 28.1 |
| ALF2 | AL08 | 33.5 |
| LWA2010 | LWA_08 | 30.599 |
| LWAE2012 | E_08 | 31.181 |
| N28F2 | E_08 | 44.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| SGN_marker | BLASTN | TG176-F [RFLP] -- FORWARD SEQUENCE : Tomato-EXPEN 2000 map, chr 8, offset 2.00, conf F(LOD3) : Tomato-EXPIMP 2001 map, chr 8, offset 0.00, conf F(LOD3) : Potato-TXB 1992 map, chr 8, offset 0.00, conf I(LOD2) : Tomato-EXPEN 1992 map, chr 8, offset 0.00, conf I(LOD2) | 2e-44 |
| EST Name | Species | Strain |
|---|
