| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 27.5 |
| Annotation | |
| Source Name | eme31F04 |
| Source Type | genomic |
| Source Sequence | AGGCATCGAGGAAGGAAAAAAGCATTGGTGGATTAGCACA CTGGATTTTGATTTTTCGGTTGAGGTAGGTTATAGTTTGT TCTATCTAATAGAGAGACTCTTAATAGCGATTGGTAGTCA TTGAGTAAAACTGTAATATTTTCTATGCATTTAATTGTTG TGGTTTGCTTGACTGATATATTGTTGTAATTGGTCTGCAA TCCGAAGACCATGAAACCCATAATAATCTTGAACTTGATC TCTCAAAGTGATGTTTTGAATAAAGAAGGTTTGATGAAAC ATTGGTAATGAAGTGAGAAGTAATGATAAAGAACAATGAA TTATATATATTGGATCGGGTGTCACTTTCCGATACATATA TATTATAGGATCAAGTGTCACGTTCCAACACATATATATT ATAGGATTGGGTGTCACATCCGACACATATATGTTATAGG ATCGGGTGTCACATCCAGCACATATATATTATAGGATCGG GTATCACGTTTCAACACATATATATTATATGATCGGATGT CACGTCCGGTGTGCACGCGCGCGCGCGCGCGCGCACACAC ACACGCACACACACATACACACACACACACACACACACAC ACACACATATATATATATATTGATTGATTGATTAATTGGA TCGGGTGTCACGTTCTGACACGATAATAATAAAGGAAAAC ATGTTAAAAGGATTTAATATACTCAATCCCAAATAACCTA TCTCCCAAAAGAAGCATGCTGGGAGGAAGCT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (cg)9c(ac)5gc(ac)4at(ac)15a(ta)6 |
|---|---|
| PCR product (bp) | 282 |
| fwd primer | eme31F04/U |
| fwd primer seq. | ggatcaagtgtcacgttccaacac |
| rev primer | eme31F04/L |
| rev primer seq. | gacacccgatccaattaatcaatca |
| fluor. primer | eme31F04/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agatcaagtgtcacgttccaacac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 278 | 278 |
| EPL-1 | 276 | 276 |
| LS1151 (S.linneanum) | ||
| LS1934 | 281 | 281 |
| LS4021 (S. incanum) | 269 | 269 |
| Nakate Shinkuro | 278 | 278 |
| Senryo 2 | 276 | 276 |
| Shironasu | 281 | 281 |
| WCGR112-8 | 276 | 276 |
| White Egg | 279 | 279 |
| PI 286106 | 283 | 283 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 27.5 |
| LW2010 | E_08 | 37.8 |
| LWA2010 | LWA_08 | 30.969 |
| LWAE2012 | E_08 | 31.96 |
| LWF2_2022 | E_08 | 37.5 |
| N28F2 | E_08 | 45.0 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0012K21_SP6_291711 Chromat_file:SL_EcoRI_012_K21-SP6 SGN_GSS_ID:308537 (vector and quality trimmed) | 7e-09 |
| TomatoBAC_end | BLASTN | SL_EcoRI0057L19_SP6_257015 Chromat_file:SL_EcoRI_057_L19-SP6 SGN_GSS_ID:273841 (vector and quality trimmed) | 3e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0139P14_T7_88683 Chromat_file:LE_HBa_139_P14-T7 SGN_GSS_ID:88683 (vector and quality trimmed) | 3e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0086C07_SP6_23532 Chromat_file:LE_HBa_086_C07-SP6 SGN_GSS_ID:23532 (vector and quality trimmed) | 3e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0239L21_SP6_400649 Chromat_file:LE_HBa_239_L21-SP6 SGN_GSS_ID:417843 (vector and quality trimmed) | 1e-07 |
| EST Name | Species | Strain |
|---|
