| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_08 |
| Marker Type | SSR |
| Map Position | 30.0 |
| Annotation | |
| Source Name | eme12F11 |
| Source Type | genomic |
| Source Sequence | ACTAATGACTCGGTTAAATGCGATAAATTATTTAAGGAAA CTACCTAATTACACAACATTGATACATATTTACTAATTCT TCTTATAGTTTGAAATAGTTACGTGTTGTCTCACTAATTA AAAATTTCATACTAGATTTCAAGTCGTATATACCTAAATA CATGTATTTATGCTACCAAATATACTCATTAATACAATTA AATTGGAAAGAGGTGAGTGAGAGACGAGTGAGAGAGAAGA GAGGAGAGAGGCAAGGTGTATCCCAGATACAAATGAATCA TACTAAAAACATTCTAGATACATTCTTAAATATATGCAGG TACATAGGGAGAGAGGCAAGCGTGAAACGAAGAGAGGCAA GGGAGAGAGAAGAGAGGAGAGAGGAGAGAGAGGCTAGTGA GAGAGTTCATGTATCTCAAATACATATGAATTCTTGGATG CAATGTGTTTGGAACAAATTGCATATAATTTTCACCTTAT ATATTCGTAATATATGTATTTTGAAACACCAAATAAACGA ATCTGAAGATCAAAATCTCGCACGAATAATAATTTTAAAA ATCTATAGATATATAATTAGATCTTAAACTAATAGTTTAT GTTGATTTTCTCATTGTTT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3gcaagg(ga)4(ag)3(ga)3g(ga)4ggctagt(ga)3 |
|---|---|
| PCR product (bp) | 231 |
| fwd primer | eme12F11/U |
| fwd primer seq. | gcaggtacatagggagagaggcaa |
| rev primer | eme12F11/L |
| rev primer seq. | ttcgtgcgagattttgatcttcag |
| fluor. primer | eme12F11/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ACGCAGGTACATAGGGAGAGAGGCAA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 234 | 234 |
| EPL-1 | 234 | 234 |
| LS1151 (S.linneanum) | 220 | 220 |
| LS1934 | 233 | 233 |
| LS4021 (S. incanum) | 227 | 227 |
| Nakate Shinkuro | 234 | 234 |
| Senryo 2 | 234 | 234 |
| Shironasu | 233 | 233 |
| WCGR112-8 | 234 | 234 |
| White Egg | 233 | 233 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_08 | 30.0 |
| LW2010 | E_08 | 38.4 |
| LWA2010 | LWA_08 | 32.442 |
| LWAE2012 | E_08 | 33.291 |
| LWF2_2022 | E_08 | 38.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0073A13_T7_16537 Chromat_file:LE_HBa_073_A13-T7 SGN_GSS_ID:16537 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0017H01_SP6_130501 Chromat_file:LE_HBa_017_H01-SP6 SGN_GSS_ID:147332 (vector and quality trimmed) | 9e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0042J19_T7_63061 Chromat_file:LE_HBa_042_J19-T7 SGN_GSS_ID:63061 (vector and quality trimmed) | 9e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0122J21_SP6_57688 Chromat_file:LE_HBa_122_J21-SP6 SGN_GSS_ID:57688 (vector and quality trimmed) | 9e-08 |
| TomatoBAC_end | BLASTN | SL_EcoRI0128J06_SP6_333358 Chromat_file:SL_EcoRI_128_J06-SP6 SGN_GSS_ID:350184 (vector and quality trimmed) | 1e-06 |
| EST Name | Species | Strain |
|---|
