| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 32.0 |
| Annotation | |
| Source Name | emh11H03 |
| Source Type | genomic |
| Source Sequence | ACCAGTGACCAATATATGGGTTAGCCTAGCCCGGTAAGAA AAAGTTGTTTTCAGGTTTTAGTAGATTCTTTGTTATGTTT TTCAAATTTTGAGTTTCAACTTTCATGTAATTGTAGTTTC AACTCTTTCATATTTATTGAAGTTTGTGGTTTTCCTTTTC TTCAAATTTGGGTATCCGCATTTATTGTTCAAATTACAAT TTACCATTAATAATTTTACAGCAAAATATATTTAACACAA CAAAGAGGGGCGACCGGGTATGAACCAGCCTGAAATTGTC CATGTAAATGAGTTAGGGACCCCATGTTCATGCTCTACCT CTCTATAAAATAATTGGACCCATGCAGACCATTTTAACTA CTGAATTTGTTTGCCAATGGCCATTGTCCCATGCAACTTA AAGCAGTAACTACCTCAGCCTGTCCCCCTGATCCATTTTA AGTGCCGGTCTGGCTTGTTTGATATGAATAGCTGTATGTA AGTATGCATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGCTAATGG AAAAGGAATAAGTGCTTTCATAGATTTCTGTTGTATTCAA GAATTTAATAAAGTATTTTGATTTATAAACTTCTTCCCCC GT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)30 |
|---|---|
| PCR product (bp) | 170 |
| fwd primer | emh11H03/U |
| fwd primer seq. | gtaactacctcagcctgtccccct |
| rev primer | emh11H03/L |
| rev primer seq. | gcacttattccttttccattagctc |
| fluor. primer | emh11H03/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ataactacctcagcctgtccccct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 180 | 180 |
| EPL-1 | 178 | 178 |
| LS1151 (S.linneanum) | 157 | 157 |
| LS1934 | 174 | 174 |
| LS4021 (S. incanum) | 140 | 140 |
| Nakate Shinkuro | 178 | 178 |
| Senryo 2 | 178 | 178 |
| Shironasu | 176 | 176 |
| WCGR112-8 | 147 | 147 |
| White Egg | 180 | 180 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 32.0 |
| ALF2 | AL07 | 46.6 |
| EW2009 | LG02 | 25.2 |
| LW2010 | E_07 | 54.5 |
| LWA2010 | LWA_07 | 55.142 |
| LWAE2012 | E_07 | 51.144 |
| LWF2_2022 | E_07 | 58.7 |
| NAF2 | NA07 | 68.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
