+Marker Data: emh05B12

Crop eggplant
Population AL2010
Linkage Group E_07
Marker Type SSR
Map Position 15.5
Annotation
Source Name emh05B12
Source Type genomic
Source Sequence NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNN NNNNNNNNNNNNNNNNNNNTCATAGTCATTTGCCGAGACT ATGTCTGGCTAAATTCATATCATATCTATGTTAGGAAACT AAGTAAAACTAGTTATATACTATAAAGGGTACATGGCACA GGATAGTATAAAATTTATTTAATAGGATTGACTTGGTTTT AAGATGGTGGGTAGTTGAGTCTGACCCTTCTTTGTTAATG TAAACCGACGAGCTGAGGTTTTGTTAGTCCCCATTTAAGT AAAGTTGAAAGAAGGGGCAGCCTTTTATCTCGGTAAGAAC TGCTGGTGTAAGTCAACAAAGAAAGTGGTTAGATTTGACA CCCCATGCTTAAGTAAAAATTAAGTCCATACAGTCAATAG TTAAATAAATTTATTATTTATTTGTTAATCTCTCAAGGTT AACTGGTAACAGATGAGACTGGTCCCTCTAATTATTGAGA GGACTATCACTAGCCATGTGGAGATCCTATCGATCAGGNN NNNTGTATTTCGTGCATTGGGACAATTAGAAAAATTTGAG ACCAAAGTGGTATTATTAAAATGTTTAGGACAAAAGTGGA ATTTTTAAAAGTTGGGAGATCTTGAAGTAATTAGGTGGTT CCCACATGAATGGTGTTGGAATTTAATTGGACCAAGTGTG GTGTGGACAATGCATACTTGGCCAAGACTTATACTGTATA TATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTATG ATGGTCTTATCTTATCTTATCATCTACACTTAGAAAAAAC TTAGAAAAAACTTAGAAAAATAAGAGCCAAGTTAAAGAAC TTCAAGAGAAGTCTCGGCCAACCCTTGGAAATTATGAAAT TCTTTTCTCTTCACTCCAAAATTATTTTGATGCTACCAAC CTACTATATCGAGGCCCCTAAATAGNNNNNNNNNNNNNNN NNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNN
Developer NIVTS
Document Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153
motif (ta)8(tg)12
PCR product (bp) 277
fwd primer emh05B12/U
fwd primer seq. ttaattggaccaagtgtggtgtgg
rev primer emh05B12/L
rev primer seq. aggggcctcgatatagtaggttgg
fluor. primer emh05B12/U_VIC
dye VIC
fluor. Primer seq. VIC-ataattggaccaagtgtggtgtgg
PCR condition 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C
polymerase Roche Taq
Line allele-1 allele-2
AE-P03 280 280
EPL-1 280 280
LS1151 (S.linneanum) 280 280
LS1934 278 278
LS4021 (S. incanum) 291 291
Nakate Shinkuro 280 280
Senryo 2 280 280
Shironasu 278 278
WCGR112-8 278 278
White Egg 280 280
Population Linkage Group Position
AL2010 E_07 15.5
EW2009 LG02 64.6
LWA2010 LWA_07 37.801
LWAE2012 E_07 31.997
DB Program Definition E-Value
EST Name Species Strain