| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 14.3 |
| Annotation | |
| Source Name | emh04B05 |
| Source Type | genomic |
| Source Sequence | AGATTAATGGGATTTTAGTTTGGGACCATCATAGAAACTC AAGGTAATGGTTATACATTTACCCATGAAAAGTATACATG ATTGTATTCAAAGTTTAGCCATTAAAGTAAGGAATTTGAT GGTGGAATTTGGGAGTTTTTGGTCAAAGATCAAGAAATGA TAAATTGATGATGAGTTGATAAACAAATTCAAAATAAAAA ATTAATAACAGATTTGGACTCGTGGGGCAATGGATAAACT GCATATGAGTTTTGTTCCAATGATTGACCCATGTGGGCTC GTGGTTGACATTTTTGTTGACTTTAACCTAGATCGCATAT TAAAATATAGAATTCAGTCAAGTATATTTTTTTAATAGAG TTGACCCCTTGGGAAGGCTCCGCAGGTGGAAAAGAGATAC AACCTGAAACAAAAAGGAAAAAACAAGTGTCCCAAAGAGC AAATGAATTCAATTGCTCTTGAATTGATCCCTCGAGAACC CTAAGACTTCTTACTGAGAAAAAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGAGAGGA GAGAGGAGAGTTATTGACTTGTAATCACCAAAACAAAATG CTTACAGTTGCTATAGATTTCATCTATGTGCTGAATGACA CAGGAAAGGGCAAGTAAGTTACAATTAACTTTAGGAAAGG CCAACTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)20acagacagac(ag)3g(ag)3 |
|---|---|
| PCR product (bp) | 195 |
| fwd primer | emh04B05/U |
| fwd primer seq. | gctcttgaattgatccctcgagaa |
| rev primer | emh04B05/L |
| rev primer seq. | cctttcctgtgtcattcagcacat |
| fluor. primer | emh04B05/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-actcttgaattgatccctcgagaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 193 | 193 |
| EPL-1 | 193 | 193 |
| LS1151 (S.linneanum) | 197 | 197 |
| LS1934 | 208 | 208 |
| LS4021 (S. incanum) | 170 | 170 |
| Nakate Shinkuro | 193 | 193 |
| Senryo 2 | 193 | 193 |
| Shironasu | 208 | 208 |
| WCGR112-8 | 193 | 193 |
| White Egg | 212 | 212 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 14.3 |
| LW2010 | E_07 | 37.0 |
| LWA2010 | LWA_07 | 37.684 |
| LWAE2012 | E_07 | 31.567 |
| LWF2_2022 | E_07 | 40.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
