| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 14.3 |
| Annotation | |
| Source Name | emh03H03 |
| Source Type | genomic |
| Source Sequence | TTTTAAGGCCTTGCTAGCAAACGTGCGACTAATGCGCGCT TACGACCTGAAGTGAGGCTCAAAACACGTCAAGCACTTTG CCTCATTTAATGTGAACTTGAATGCCATCATTAGGGCTCT TAAGTCAAATTTTTCCTTGTGAAATAAGTGTTTACTAAAG AAGCGACACTAAACAATTGACATTTCTTTAAAAAAAACAA TTTCTTTGTCTTCATATTATTATTCACGCTTATATTTTTT TGTCTCGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCATATATATATATATTTTCTATTTGCACCTTCT TTCATTAAACCATGCTTTATTTGCACTTTGCGTTTAAAGC TTTAACATAGTTCATAGACATGTTCATACTAGTAAACACA TTTGTAAAATCAACTTTAAATCATGAAAATTGAGTAAAAA GAAGATTAGGGCACCATGGGTAGAAGGACCCAATAGCTAA AACCTACATAGGCTTCTGCTAGCAAGGCCA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tat)3tcacgcttatatttttttgtctcggac(tc)19a(ta)6 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | emh03H03/U |
| fwd primer seq. | gctcaaaacacgtcaagcactttg |
| rev primer | emh03H03/L |
| rev primer seq. | acgcaaagtgcaaataaagcatgg |
| fluor. primer | emh03H03/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-actcaaaacacgtcaagcactttg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 305 | 305 |
| EPL-1 | 301 | 301 |
| LS1151 (S.linneanum) | 286 | 286 |
| LS1934 | 299 | 299 |
| LS4021 (S. incanum) | 294 | 294 |
| Nakate Shinkuro | 304 | 304 |
| Senryo 2 | 299 | 299 |
| Shironasu | 299 | 299 |
| WCGR112-8 | 301 | 301 |
| White Egg | 293 | 293 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 14.3 |
| LWA2010 | LWA_07 | 37.735 |
| LWAE2012 | E_07 | 31.318 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0135C20_SP6_381818 Chromat_file:SL_MboI_135_C20-SP6 SGN_GSS_ID:399012 (vector and quality trimmed) | 5e-06 |
| TomatoBAC_end | BLASTN | LE_HBa0020D07_SP6_132625 Chromat_file:LE_HBa_020_D07-SP6 SGN_GSS_ID:149456 (vector and quality trimmed) | 5e-06 |
| TomatoBAC_end | BLASTN | LE_HBa0197P20_SP6_110958 Chromat_file:LE_HBa_197_P20-SP6 SGN_GSS_ID:110956 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
