| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 16.1 |
| Annotation | |
| Source Name | emf21M05 |
| Source Type | genomic |
| Source Sequence | CTAGTTCAACACCCCCAACAGGAGTAACACCAGGTGTATA AGGATTCAGTAAAAGCACTAGCATTATAAAGTTGAACTGG TACTAGATATATAAATATACAACACTAGACCAACCCTCCC AAGACCTGGAAGTCACCTACACAGAACTACTATAGACATG ATACAACATAACACACACACACACACACACACACACACAC ACACATTAAGGAGAACAGTTTGCAATGTGGTTAAGCCAAG TGGCAAGGCTTCTGCTAGCAAGGCCTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)17 |
|---|---|
| PCR product (bp) | 138 |
| fwd primer | emf21M05/U |
| fwd primer seq. | ctcccaagacctggaagtcaccta |
| rev primer | emf21M05/L |
| rev primer seq. | agaagccttgccacttggcttaac |
| fluor. primer | emf21M05/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atcccaagacctggaagtcaccta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 134 | 134 |
| EPL-1 | 140 | 140 |
| LS1151 (S.linneanum) | 194 | 194 |
| LS1934 | 142 | 142 |
| LS4021 (S. incanum) | 188 | 188 |
| Nakate Shinkuro | 150 | 150 |
| Senryo 2 | 142 | 142 |
| Shironasu | 142 | 142 |
| WCGR112-8 | 142 | 142 |
| White Egg | 142 | 142 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 16.1 |
| ALF2 | AL07 | 27.0 |
| EW2009 | LG02 | 64.1 |
| LWA2010 | LWA_07 | 39.185 |
| LWAE2012 | E_07 | 32.875 |
| NAF2 | NA07 | 44.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
