| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 6.1 |
| Annotation | |
| Source Name | emf11K21 |
| Source Type | genomic |
| Source Sequence | GATTCAGAAGGCTTGTGACACTTTCAGTTATTGACAAAGT TTTAAGATGCATTATGTTCGCGAAAATGGCCGGATTGTTG CATGATGCTGATGCATTATTTTCTTTCCCTCTTTTTTGCA TTATTTTGGCGGTTGGGGTGTTCTTGTTGTGGGGTTGTTC GTACAGTCACAAGATGCAGCCCTCCAACTGAATTTGGTTC TTGAGTGGTGCATAATTCTTCTTTCTTATTCCTTTTTGTA TTGATTTTGATGGGTTTGAAATTCTTTTACCTGGTATTCC CCATTGTGCAGATATGCCTCAATCTAATTCTGTATGTTTG CAGTTTTTGATTTTGCGTATGATGCTTACTTTTATATATA TATGTATGTATATATATATAAGTTTTTTATTTTGCATATG ATGCTTACTTTTATATATATATATATATATATATATATAT AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGTTGGATATATATTGACTGGTGAGTTAATATTGCA GGGCTTCATCAGTTTTTAGCATTCTTTTGCTACTCCTCCG TGATTCCTCCAATTTTAAGATTCGGATACAAGCAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)14t(ag)23ttgga(ta)3 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | emf11K21/U |
| fwd primer seq. | tttacctggtattccccattgtgc |
| rev primer | emf11K21/L |
| rev primer seq. | cacggaggagtagcaaaagaatgc |
| fluor. primer | emf11K21/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-attacctggtattccccattgtgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 296 | 296 |
| EPL-1 | 296 | 296 |
| LS1151 (S.linneanum) | 248 | 248 |
| LS1934 | 286 | 286 |
| LS4021 (S. incanum) | 244 | 244 |
| Nakate Shinkuro | 296 | 296 |
| Senryo 2 | 296 | 296 |
| Shironasu | 338 | 338 |
| WCGR112-8 | 295 | 295 |
| White Egg | 288 | 288 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 6.1 |
| LW2010 | E_07 | 28.5 |
| LWA2010 | LWA_07 | 29.587 |
| LWAE2012 | E_07 | 38.342 |
| LWF2_2022 | E_07 | 30.6 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0144L10_SP6_365334 Chromat_file:SL_MboI_144_L10-SP6 SGN_GSS_ID:382545 (vector and quality trimmed) | 3e-35 |
| TomatoBAC_end | BLASTN | LE_HBa0032K19_T7_140666 Chromat_file:LE_HBa_032_K19-T7 SGN_GSS_ID:157497 (vector and quality trimmed) | 3e-35 |
| EST Name | Species | Strain |
|---|
