| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 13.7 |
| Annotation | |
| Source Name | emf01M12 |
| Source Type | genomic |
| Source Sequence | TCCTTGCTAGCAGAAGCCTTGAGGCTCAACTCTTGTCCAA AATTTGTTGAGTTACACTTTTGTGAAAGGTTGTTATATCC TAGAGGGGACAAGTCAAGGAGAATACTAGTGGATCAGTAA AAACTTTTACTGCAGTGGGCTTGAATCTCTTTAAAGGGAG CGAGATATCCGCACCTCAGACTGAAGAGTTTTTGTTCAAT TTTGACATTTATTTTTCAACTGTAATTCATTGTATTTGTG GTATATTACACCAATAATTATATATATATATATATGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTA TGTTTGCTATGATTTCACCATTAGGTGGAATCCCACAACT AAGAAAATCCCATTTCTTGAATCCCATCATTTTTTTATTG AAGATCCAAATTTGAAGCACCATTCAATTCCCTTTCCATC CAAATCTAACTGGATATTTGGATGTAATGAATGAAGGTAT CAAGATCCGTAAATGGATTGAAATCTTGTAGAAGTAAAGT CCAAGTAATATCAATATGTACCATATAAACTTTACAACAT GTCAAATTTCATTTTAATATTTTCGTCACCAAATTTACTA AATTTGTTTTATTGACTATCACCCTACCGTAATTGTCTTC CTCTACCGGGGCTTGGTACCAAAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)8(tg)21 |
|---|---|
| PCR product (bp) | 268 |
| fwd primer | emf01M12/U |
| fwd primer seq. | ccgcacctcagactgaagagtttt |
| rev primer | emf01M12/L |
| rev primer seq. | gaaagggaattgaatggtgcttca |
| fluor. primer | emf01M12/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acgcacctcagactgaagagtttt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 270 | 270 |
| EPL-1 | 272 | 272 |
| LS1151 (S.linneanum) | 247 | 247 |
| LS1934 | 272 | 272 |
| LS4021 (S. incanum) | 266 | 266 |
| Nakate Shinkuro | 272 | 272 |
| Senryo 2 | 272 | 272 |
| Shironasu | 272 | 272 |
| WCGR112-8 | 274 | 274 |
| White Egg | 272 | 272 |
| PI 286106 | 269 | 269 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 13.7 |
| ALF2 | AL07 | 23.3 |
| EW2009 | LG02 | 68.8 |
| LW2010 | E_07 | 37.0 |
| LWA2010 | LWA_07 | 37.896 |
| LWAE2012 | E_07 | 31.422 |
| LWF2_2022 | E_07 | 40.4 |
| N28F2 | E_07_01 | 40.2 |
| NAF2 | NA07 | 38.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0025I24_SP6_278412 Chromat_file:SL_MboI_25_I24-SP6 SGN_GSS_ID:295238 (vector and quality trimmed) | 5e-22 |
| TomatoBAC_end | BLASTN | SL_EcoRI0052O21_T7_245993 Chromat_file:SL_EcoRI_052_O21-T7 SGN_GSS_ID:262819 (vector and quality trimmed) | 5e-22 |
| TomatoBAC_end | BLASTN | SL_MboI0062N09_T7_164214 Chromat_file:SL_MboI_62_N09-T7 SGN_GSS_ID:181040 (vector and quality trimmed) | 2e-21 |
| TomatoBAC_end | BLASTN | LE_HBa0017J21_SP6_130637 Chromat_file:LE_HBa_017_J21-SP6 SGN_GSS_ID:147468 (vector and quality trimmed) | 2e-21 |
| TomatoBAC_end | BLASTN | LE_HBa0134I05_T7_60681 Chromat_file:LE_HBa_134_I05-T7 SGN_GSS_ID:60681 (vector and quality trimmed) | 2e-21 |
| EST Name | Species | Strain |
|---|
