| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 71.4 |
| Annotation | |
| Source Name | emf01E17 |
| Source Type | genomic |
| Source Sequence | CTGCCCCGCAACCAACTCCCACCCGTTCATCCAAACATGG ATTATTCTTCCTAATTAAATTAAATATTCTTCTTGATAAA AATTAGTGTTGTATGAAAGACTCTAATCATCATAAACCCT AATAATTAAAATTTAAAGAGGATTTTTCAAAATAAGTAAA CGCTTAAAATATAATAACTTAAAAATAATAATTATAGTGT GCTAAAATTACGAGGGGCGAAGGACATCGAGAAAGGGAGT ATGTCTATCTGTCAAATAATTAAATATGTGTAACTGATAT ATATATATATATCAAGCGAGATTGAGAGAGGGAGAAGAGA GGCGAGTGACAATGAGAGGGGGAAGAGAGAGGCGAGCGAG AGAGGCGAGTGAGAGAGGATAGAGAGTGGAGAGATATGAA TTGTATATGTATGTCTATTGAATTGAATATGTATATATGT CAAATAATAATATATATGCAATTGGTATGCATATGTATTT GTATATGTAGCAAAAGATTGCAGGAAAGATAGCAACAAAA TCATGTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)7tcaagcgagattg(ag)3ggaga(ag)3gcgagtgacaatgagaggggga(ag)4gcgagcg(ag)3gcgagtg(ag)3gat(ag)3tg(ga)3 |
|---|---|
| PCR product (bp) | 296 |
| fwd primer | emf01E17/U |
| fwd primer seq. | cgaaggacatcgagaaagggagta |
| rev primer | emf01E17/L |
| rev primer seq. | gctatctttcctgcaatcttttgct |
| fluor. primer | emf01E17/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agaaggacatcgagaaagggagta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 296 | 296 |
| EPL-1 | 296 | 296 |
| LS1151 (S.linneanum) | ||
| LS1934 | 334 | 334 |
| LS4021 (S. incanum) | 311 | 311 |
| Nakate Shinkuro | 296 | 296 |
| Senryo 2 | 296 | 296 |
| Shironasu | 339 | 339 |
| WCGR112-8 | 296 | 296 |
| White Egg | 335 | 335 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 71.4 |
| ALF2 | AL07 | 84.9 |
| LW2010 | E_07 | 99.3 |
| LWA2010 | LWA_07 | 96.834 |
| LWAE2012 | E_07 | 93.544 |
| LWF2_2022 | E_07 | 108.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
