| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 4.9 |
| Annotation | |
| Source Name | eme03H04 |
| Source Type | genomic |
| Source Sequence | CCACAACGAATTGGCATTGTTGCCACGCCCGTCGTAAACT TTCCATGATAAATGATGTAGTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTTGGATTTAAAGAGAATTGTCTAA CTTTTGGGACAAGTGTCGCTAGAATGTGCTGCACAACTAT CCTACATTGGCAAACGCAGTTCTGGGGTGACACTCCTCAC CCAATTCGGTGTTCAATAATACTCCCAAGACTAAAACATG CACAATTGTCTATCAAATCAATCTTCTTTAAGACTCATAT CATCTATCACCATCATCTATCAATGAAATTATTATGAAAA AGTATGTTTACATTGTCATCAATATGTACTCAAAATATCA TTTAGGCTCAATGCTCAAATCAATCAAAACTCATTAACAT GTCAAGTGTTTCCTTAAAAAAAAACTCATGCTTTACAAAT AATCTTTGCATATCACAAAAACTCTCTCAAATCATTATTC ATACTCAACAATTATATTCATGAAACTCAGTAAAAATATG CTAAAAGAAATCATCGAGATTAATATGCTCAGAATGACTA TCAAATCTCAATTTTTCAGAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)18 |
|---|---|
| PCR product (bp) | 128 |
| fwd primer | eme03H04/U |
| fwd primer seq. | gcccgtcgtaaactttccatgata |
| rev primer | eme03H04/L |
| rev primer seq. | gtgcagcacattctagcgacactt |
| fluor. primer | eme03H04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ACGCCCGTCGTAAACTTTCCATGATA |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 122 | 122 |
| EPL-1 | 133 | 133 |
| LS1151 (S.linneanum) | 154 | 154 |
| LS1934 | 123 | 123 |
| LS4021 (S. incanum) | 120 | 120 |
| Nakate Shinkuro | 123 | 123 |
| Senryo 2 | 122 | 133 |
| Shironasu | 121 | 121 |
| WCGR112-8 | 137 | 137 |
| White Egg | 133 | 133 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 4.9 |
| EW2009 | LG02 | 75.9 |
| LW2010 | E_07 | 30.9 |
| LWA2010 | LWA_07 | 30.107 |
| LWAE2012 | E_07 | 37.706 |
| LWF2_2022 | E_07 | 32.9 |
| N28F2 | E_07_01 | 34.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
