| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_07 |
| Marker Type | SSR |
| Map Position | 16.1 |
| Annotation | |
| Source Name | emd01B12 |
| Source Type | genomic |
| Source Sequence | TCAATAGCTTGCCACTTGGCTTAACCACATTGCAAACTGT TCTCCTTAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTTATGTTGTATCATGTCTATAGTAGTTCTGTGTAGGTGA CTTCCAGGTCTTGGGAGGGTTGGTCTAGTGTTGTATATTT ATATATCTAGTACCAGTTCAACTTTATAATGCTAGTGCTT TTACCGAATCGTTTCTTGCACGCACTCGTTACTAGCCTTT CCAGGTTTGGGTTAGGTTTCCTTATCGGGGAGTTAAGGTA AGCACCATCATGACTTGTATAGTCGGATTGTGATATTATA TTAAATTGAGAATACATTAGTCTACATTAACATTGTGGAT TACTATAATTAGATTAATTAAATTAGTTCAATAACATTTG ATCATTTAATTAAAAGTCCAAATTCATTTATTTGGGCTGT AAAAGATGATTCACTTTACCAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)16 |
|---|---|
| PCR product (bp) | 262 |
| fwd primer | emd01B12/U |
| fwd primer seq. | tcaatagcttgccacttggcttaac |
| rev primer | emd01B12/L |
| rev primer seq. | aggaaacctaacccaaacctggaa |
| fluor. primer | emd01B12/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ATCAATAGCTTGCCACTTGGCTTAAC |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 265 | 265 |
| EPL-1 | 271 | 271 |
| LS1151 (S.linneanum) | ||
| LS1934 | 274 | 274 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 282 | 282 |
| Senryo 2 | 273 | 273 |
| Shironasu | 273 | 273 |
| WCGR112-8 | 273 | 273 |
| White Egg | 273 | 273 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_07 | 16.1 |
| EW2009 | LG02 | 64.1 |
| LWA2010 | LWA_07 | 39.138 |
| LWAE2012 | E_07 | 32.882 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
