| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.6 |
| Annotation | |
| Source Name | emk05B02 |
| Source Type | genomic |
| Source Sequence | ACTCGACGTTCAAGACTAGCACTTTTATTTGTGATGAGCC CTTACTTCGAGAATCTACCATTTTCCACTCTACCATGTAT TTTATTTTGATATAATATATTTATGGCCTTGTTGAGGTAT TACTTTATATGTTGTTAAGTATTAGAGTCTTCTATTTGAT AGAAATCATCGTTACCAGTTTTGTCCGTATATATGTTAGG CGGTATGCTTTATCGACAAAATATGTTACTATTCCATTCT TTTTAATGTTATTTCATTGTCTTAAAAAGGACCATAGATC CTTCCCCATTTTATTTCCGTAACACACACACACACACACA CACACACACACACACACACACACACACACACACACACATA TATATATATATATATATATATATATATATATATATATATA TATATATACCTATGAATGCTTAAGATGACTTGTGTAAGAT GCCTTCGGGTATCTCCTTCGCCGTGTGATGACTAGACCCC TAGGCCAGGTCGTTACTAGTTGTTTCATGTTCAATTCAAG CTTTTCAAGCCTTGTTCAAGCTCCTTCGAGGAGGAATATT CCTAAAAGGGGGATGATGTAAGGACCCGAGCTTCAGAAGG CCTTAATGATGATTGAAAAGTAGTTTTCAATAGTTTTGGC CAACGTGTCTGATTTCGCTCAACACGGCTACTCAAAGGAA GTAAGGGCGGTCTTCATCAGCATAATAACCTAACTTAAGA GGTTGGTGTCGAATCCCACATGGAATCATGGTTCACAAAT TGAAGTACAGGCTATAACAATATTAATACTAGTAATAGTC CAATTTATGATTATCAGGATTCTTATCTGAATAATAATAA CACGGGGAATTTAGAAAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)28a(ta)25 |
|---|---|
| PCR product (bp) | 226 |
| fwd primer | emk05B02/U |
| fwd primer seq. | aaaaggaccatagatccttcccca |
| rev primer | emk05B02/L |
| rev primer seq. | acctggcctaggggtctagtcatc |
| fluor. primer | emk05B02/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-ataaggaccatagatccttcccca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 226 | 226 |
| EPL-1 | 228 | 228 |
| LS1151 (S.linneanum) | 173 | 173 |
| LS1934 | 218 | 218 |
| LS4021 (S. incanum) | 199 | 199 |
| Nakate Shinkuro | 226 | 226 |
| Senryo 2 | 216 | 228 |
| Shironasu | 224 | 224 |
| WCGR112-8 | 198 | 198 |
| White Egg |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.6 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.962 |
| LWAE2012 | E_06 | 43.559 |
| LWF2_2022 | E_06 | 41.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0144I16_SP6_365202 Chromat_file:SL_MboI_144_I16-SP6 SGN_GSS_ID:382413 (vector and quality trimmed) | 3e-42 |
| EST Name | Species | Strain |
|---|
