| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 37.9 |
| Annotation | |
| Source Name | emk04N11 |
| Source Type | genomic |
| Source Sequence | ACTTGTAATTAATTATCTATATTTATACATATCATTTTCA TCCCAATTTTACTTTCAAAATTAAACTCCCCCTCAACTTT GAACAATAATCAAACTCCTCCTTTATATAATGCATTGTCC ATTTATCCTTGTTATATCACACACACACACACACACACAC ACACACACGCACACACACACACATATATATATATATATAT AGAATTCTCTTTATTTCAAAATAAGTGAATTGTTGGGCTA TATCACACATATTAAGAAAAAAAATAAAGACAAAATTTAA TCATATTTTTTCATTTTTATCCTTTTCAAACTTCAAACAC TAATTTAATGCATCATTTATTTCTAATACAAAATTCAATC CTAGAAACTCTGGAAGAAGATAATTAGGTAGAAATTAGAT AAGTAGTCATAGTCTTAAACACAATTTAAATCCCAAAACC TAGTGTCACAAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)15gc(ac)6a(ta)9 |
|---|---|
| PCR product (bp) | 186 |
| fwd primer | emk04N11/U |
| fwd primer seq. | aactccccctcaactttgaacaat |
| rev primer | emk04N11/L |
| rev primer seq. | tgtgtgatatagcccaacaattcac |
| fluor. primer | emk04N11/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atctccccctcaactttgaacaat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 190 | 190 |
| EPL-1 | 188 | 188 |
| LS1151 (S.linneanum) | 183 | 183 |
| LS1934 | 188 | 188 |
| LS4021 (S. incanum) | 148 | 148 |
| Nakate Shinkuro | 182 | 182 |
| Senryo 2 | 186 | 186 |
| Shironasu | 178 | 178 |
| WCGR112-8 | 194 | 194 |
| White Egg | 180 | 180 |
| PI 286106 | 184 | 184 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 37.9 |
| ALF2 | AL06 | 43.4 |
| EW2009 | LG04 | 66.9 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.514 |
| LWAE2012 | E_06 | 43.119 |
| LWF2_2022 | E_06 | 41.9 |
| N28F2 | E_06 | 50.4 |
| NAF2 | NA06 | 38.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0092L23_T7_356626 Chromat_file:SL_EcoRI_092_L23-T7 SGN_GSS_ID:373452 (vector and quality trimmed) | 3e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0129N10_T7_334005 Chromat_file:SL_EcoRI_129_N10-T7 SGN_GSS_ID:350831 (vector and quality trimmed) | 3e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0123D13_SP6_329244 Chromat_file:SL_EcoRI_123_D13-SP6 SGN_GSS_ID:346070 (vector and quality trimmed) | 3e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0037D15_T7_281157 Chromat_file:SL_EcoRI_037_D15-T7 SGN_GSS_ID:297983 (vector and quality trimmed) | 3e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0037D13_T7_281155 Chromat_file:SL_EcoRI_037_D13-T7 SGN_GSS_ID:297981 (vector and quality trimmed) | 3e-07 |
| EST Name | Species | Strain |
|---|
