| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 35.1 |
| Annotation | |
| Source Name | emk03O04 |
| Source Type | genomic |
| Source Sequence | ACTAGTAGCCTTTTTTTTCTTTTTGATAATCATGGTGTCG GAGTTAGAAGTTAGACCTCTACGTGCCAACTCCCACCAGT ATAAGTATCAAAAGAAATGGCTGTGCTTTTTTGACTTTGC TGAAATGTGAACTTGAGAGCCTTTTTGCTGCTAAGGTTAG TAGCTTGACTAATTATACAGAATACATGCTAACTCCGACC AGTACTTTTCACTACTAAAAGTCCTCCAAAAATTCTACCA AAAATTCGGCAGCATAACCCCTGTAAAATGGACTATCCCA GGGGTTTCAAAGCTGCCCCTTAACAGCCAACAACATCACA ACAAGTCCCCATAACAATTTCCAACAATAACAAGGCTATA GGGTACTACCCTTATTATTAAATAATGTGTTTACTTTCAA AAAGGTATTCCCCTGAGATGATATCAACCCCTACTTCACA ACTCTTTGACTTGAATTTTTGTCGTTAGAGGAATCGATTT TCATGAATCACAAAAAAAGGGAATTAGGGAGGGGCCTGTC TTAGTGTAATTTGTTTTACTTTATGAAATTTTATCTATTT TTCAAGACTTAATAATATATGTTAAGGGGTGATTAAAAAT AAAAAACGAATGAAAAAAAAAGATTTGGGCAGCCACTTTT GTATAGCCTTTCTAAGTTATTTTTAACATCATACATACAT ACACACACACACACACACACACACACACACACACACACAC ACACACATATATATATATATATATACATATATATATATAT ATATATATATATTGCCCTAAGTTTAGTTGGTTCCAAGACT TATACACACATTATAAGCTCCCTAACAGTTTTATATTTGA TTAAATGATGAAAACAATCAATCCCTTTGAGAAAAAATCA ACAAACCCCTATCATTTGGTAAGTAGCTAAATTCTATCTT GAAACTGTGTAATGTTTTGTAATTGTGGAATATATCATTG CATATGTCTGAGTTTGTAGTTTGTAAATATGTTTTGGAAA GCTGATTCACTTATCCACAACCTTTATGATTATGTGAAAT TATGATGTGCTTGTATGGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)23a(ta)9ca(ta)12 |
|---|---|
| PCR product (bp) | 177 |
| fwd primer | emk03O04/U |
| fwd primer seq. | aagatttgggcagccacttttgta |
| rev primer | emk03O04/L |
| rev primer seq. | ttggaaccaactaaacttagggca |
| fluor. primer | emk03O04/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atgatttgggcagccacttttgta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 176 | 176 |
| EPL-1 | 176 | 176 |
| LS1151 (S.linneanum) | 125 | 125 |
| LS1934 | 150 | 150 |
| LS4021 (S. incanum) | 195 | 195 |
| Nakate Shinkuro | 178 | 178 |
| Senryo 2 | 168 | 176 |
| Shironasu | 180 | 180 |
| WCGR112-8 | 174 | 174 |
| White Egg | 172 | 172 |
| PI 286106 | 149 | 149 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 35.1 |
| ALF2 | AL06 | 40.4 |
| EW2009 | LG04 | 71.2 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 35.455 |
| LWAE2012 | E_06 | 42.23 |
| LWF2_2022 | E_06 | 39.7 |
| N28F2 | E_06 | 48.9 |
| NAF2 | NA06 | 38.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
