| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 45.2 |
| Annotation | |
| Source Name | emj04E17 |
| Source Type | genomic |
| Source Sequence | ATTTCACGCTGCTGAAATAGTTTCTTAGAATAGTACCTAG CACAACTCAAGTATTATTGATATGCATATATATATACACA CACACACACACACACACACTCTACTTAAAATAGTATTGTA GTAATATTTATCTTCATTGATTATTTTGACTTATTAATTT TCTCCTGTATTTTATCTTAGTGGGCTAATTCATCACACTG CTCTCAGCATAACTCGTAGTTTTAAGCAACATATGAACAT AACATTCCACTATACTGACAGATGGTACAGCTGAACCAAA GTTTGATATTGATTTGCAATTAAGTCGATGAGTGATACTA TGAATACTTAAAATACAACCCCAACATGTCAGATTAAATT TTATTCAGAAGAATATCTAAACCTAATCAGCAAAGCAATC ATCTAAGAGGAAAC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)4t(ac)12 |
|---|---|
| PCR product (bp) | 213 |
| fwd primer | emj04E17/U |
| fwd primer seq. | tcacgctgctgaaatagtttcttag |
| rev primer | emj04E17/L |
| rev primer seq. | cgagttatgctgagagcagtgtga |
| fluor. primer | emj04E17/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-acacgctgctgaaatagtttcttag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 215 | 215 |
| EPL-1 | 219 | 219 |
| LS1151 (S.linneanum) | 212 | 212 |
| LS1934 | 214 | 214 |
| LS4021 (S. incanum) | 219 | 219 |
| Nakate Shinkuro | 219 | 219 |
| Senryo 2 | 215 | 215 |
| Shironasu | 219 | 219 |
| WCGR112-8 | 215 | 215 |
| White Egg | 219 | 219 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 45.2 |
| ALF2 | AL06 | 50.9 |
| EW2009 | LG04 | 44.0 |
| LW2010 | E_06 | 42.2 |
| LWA2010 | LWA_06 | 43.615 |
| LWAE2012 | E_06 | 51.846 |
| LWF2_2022 | E_06 | 48.1 |
| NAF2 | NA06 | 54.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0008E04_SP6_290388 Chromat_file:SL_EcoRI_008_E04-SP6 SGN_GSS_ID:307214 (vector and quality trimmed) | 4e-06 |
| EST Name | Species | Strain |
|---|
