| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 42.4 |
| Annotation | |
| Source Name | emh21G04 |
| Source Type | genomic |
| Source Sequence | NNACCAAAAACTTAATATAGCAGCAACCACCAGGAACACA TAAATATATAACTTCATTCATTTCATGGCCACACATCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC CCAACTCTTTTCTAAAGTTAGTTCCTACAAAATGATCTGG TGATGACGTTCACATGAAGGAGGAGCTCGCAAGTNNNNNN NNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3acttcattcatttcatggc(ca)3(tc)22 |
|---|---|
| PCR product (bp) | 162 |
| fwd primer | emh21G04/U |
| fwd primer seq. | cagcaaccaccaggaacacataaa |
| rev primer | emh21G04/L |
| rev primer seq. | ctccttcatgtgaacgtcatcacc |
| fluor. primer | emh21G04/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atgcaaccaccaggaacacataaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 161 | 161 |
| EPL-1 | 164 | 164 |
| LS1151 (S.linneanum) | 181 | 181 |
| LS1934 | 157 | 157 |
| LS4021 (S. incanum) | 193 | 193 |
| Nakate Shinkuro | 163 | 163 |
| Senryo 2 | 163 | 163 |
| Shironasu | 155 | 155 |
| WCGR112-8 | 161 | 161 |
| White Egg | 157 | 157 |
| PI 286106 | 159 | 159 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 42.4 |
| ALF2 | AL06 | 47.1 |
| EW2009 | LG04 | 50.4 |
| LW2010 | E_06 | 37.9 |
| LWA2010 | LWA_06 | 39.983 |
| LWAE2012 | E_06 | 46.593 |
| LWF2_2022 | E_06 | 44.2 |
| N28F2 | E_06 | 66.3 |
| NAF2 | NA06 | 43.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
