| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 60.5 |
| Annotation | |
| Source Name | emh01E24 |
| Source Type | genomic |
| Source Sequence | ACTCTCGTCGCATTTCCTATCATGTTTCAACAAAGCAACA GTCAAGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTG AAGCTTCCACTAGTTTGTCATATGGCCTAAGACTCTTGCT GGAAAAAGAGAACATGCATGATGAGCTAAATGAACATTTG AGCAGTGGCTCTCTCTCAGAAGAAGAGAGAATTTCTCAAA AAATTAAACTCAATTCTCAAGCGCTCGGTCTTGTTATGCA TAGAAGGGGTTATTTGGCCAAAACATACCCAAAAAAAAAT CAATTTTATAAACATAACGATCAGAAATGGTGTTATTGAC GTATGAACCAGCCAACAGACTGGAGCACAGGTGAAGTGTT TGGCTGCTGTTATGTAAATTTATAATCATTTCAGTGTTAC TGGAATAGAGACCAACAAAAGTAAATGTAAAATGTCAAAA GATTTCTTACAGAGGGGTAACTAGGCATATAGACGACTTG CCGAGGATGACCAATCATCATCTGCTGTCCATACTGCATT GAAAAGATAAGAATTTTGAACATTCTAAAACCCATTTCAA ACATAATGACAGAAGAATCAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)14 |
|---|---|
| PCR product (bp) | 244 |
| fwd primer | emh01E24/U |
| fwd primer seq. | cgtcgcatttcctatcatgtttca |
| rev primer | emh01E24/L |
| rev primer seq. | ccccttctatgcataacaagaccg |
| fluor. primer | emh01E24/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-agtcgcatttcctatcatgtttca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 246 | 246 |
| EPL-1 | 246 | 246 |
| LS1151 (S.linneanum) | 233 | 233 |
| LS1934 | 264 | 264 |
| LS4021 (S. incanum) | 285 | 285 |
| Nakate Shinkuro | 246 | 246 |
| Senryo 2 | 246 | 246 |
| Shironasu | 246 | 246 |
| WCGR112-8 | 246 | 246 |
| White Egg | 260 | 260 |
| PI 286106 | 262 | 262 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 60.5 |
| LW2010 | E_06 | 67.7 |
| LWA2010 | LWA_06 | 64.866 |
| LWAE2012 | E_06 | 70.455 |
| LWF2_2022 | E_06 | 82.0 |
| N28F2 | E_06 | 97.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
