| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.6 |
| Annotation | |
| Source Name | emg21M05 |
| Source Type | genomic |
| Source Sequence | CCTAACACAAGTAAGAAATTATAGTTCTTGCCATATGTTG TTTATTATGTTTTGGTTATCATACTATTTTGTTATTGTTA TTGTCTCTTTCTGGTAGATGTTTCACTACTTTTTCTTATT AACAACTATGCTTTATTCATTGTCTTCTTCTTCCTTTACT TGGGTTTGATGCACTTGAGCCGAGGGTCTTTCAGAAACAG CCTCTCTACCACCCGAGGTAGTGGTAAGGTCTGCGTACTC TACTCTCGCCATACCCCACTTAATGGGATTTCACTAGATA TGTTTTTGTCATGTAAATGTGATGATAAGTCATTAATCAT AGTTGCAGGGAGATCTTGGAACGTCTTTGTTTACTCAACA ACTTGCTTGGTGTTATTTGCATGCTTGTCACATATGCTTA GTTGCGCCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCCCTTTTTTGCTGAAGTAGGACGA TGAGAGTGCTCTTCTGCGTTTCCTAGAATGCAAGTTTGGT AAAGGACAACCAGGTGCTCCTGAATTCTTTTATGATCCCA AATATGCGCTACGCCTTTGCCTCAAGGAAAAGAGAATGCG AGCTTGTGTTCATATATATAGCATGATGTCTATGCATGAA GAAGCAGTTGCCCTAGCACTACAGGTTCTGTTAAATATTG ATTGCCCTCTGTGTGTTTCCAAGAAGCCTGATGGTTCTGT TAATCTTACTGCATATATTCTTTAATCTATGACTACATTA ACTATGAAGTTAGCTTATTTGTCATGTTGCATCCTTTACT GTCCTTTCGAATGAGCTGAAATCAAGAATGTAAGGCATAA GGTTGGTTGATTGATTGCTGCTTGTCACGTTTAGGACAAC AAGACTAAGAGCCAGTTGTCAAGTACAAGCTCTTTTTGTT ACTTGCACTAAATAAAAAGAAAAAAGAC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)23 |
|---|---|
| PCR product (bp) | 153 |
| fwd primer | emg21M05/U |
| fwd primer seq. | tgtcacatatgcttagttgcgcct |
| rev primer | emg21M05/L |
| rev primer seq. | agcacctggttgtcctttaccaaa |
| fluor. primer | emg21M05/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agtcacatatgcttagttgcgcct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 151 | 161 |
| EPL-1 | 150 | 159 |
| LS1151 (S.linneanum) | 151 | 151 |
| LS1934 | 143 | 151 |
| LS4021 (S. incanum) | 154 | 154 |
| Nakate Shinkuro | 152 | 160 |
| Senryo 2 | 156 | 159 |
| Shironasu | 151 | 154 |
| WCGR112-8 | 147 | 156 |
| White Egg | 151 | 159 |
| PI 286106 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.6 |
| LWA2010 | LWA_06 | 37.185 |
| LWAE2012 | E_06 | 43.776 |
| N28F2 | E_06 | 37.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0015I22_SP6_129823 Chromat_file:LE_HBa_015_I22-SP6 SGN_GSS_ID:146654 (vector and quality trimmed) | 1e-20 |
| TomatoBAC_end | BLASTN | LE_HBa0108F06_T7_95867 Chromat_file:LE_HBa_108_F06-T7 SGN_GSS_ID:95867 (vector and quality trimmed) | 1e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0077P05_T7_18777 Chromat_file:LE_HBa_077_P05-T7 SGN_GSS_ID:18777 (vector and quality trimmed) | 1e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0201G20_T7_360123 Chromat_file:LE_HBa_201_G20-T7 SGN_GSS_ID:377334 (vector and quality trimmed) | 2e-12 |
| TomatoBAC_end | BLASTN | SL_EcoRI0025K05_T7_235762 Chromat_file:SL_EcoRI_025_K05-T7 SGN_GSS_ID:252588 (vector and quality trimmed) | 1e-11 |
| EST Name | Species | Strain |
|---|
