| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.0 |
| Annotation | |
| Source Name | emg11L19 |
| Source Type | genomic |
| Source Sequence | TTTTCTAAATATGATATACCTAGATAATAAATTGCAAAAT ATATTTAAAATAGTAAATATTTTATAATAGAAACTCAAAA AGGTAGTTAACCCTACTAATATCTATGAACTATAGTTTTT ATTAGATCATCCGAAATTTCAATTCAAATTAAAAATAATA GTGACTTTTTTTTTCTGTATAACAGGATTATTAGTTACTT GGTGGATTTCTTCAGGACATTTCCCACTAAGCGATTTATA TGAATTATTAATTTTTCTTTCATGGAGTTTCTCCCTTACT CATAATTTCGTATTTTAAAAAAATATTTTCATTTTAAGTA AAATAACTGGACCAAGTGCTATTTTGACCCAAGGCTTTGT GTGTGTGTGTGTGTGTGTGTGATGTTGGGTTGGTTTGGCT TGGGGTTGGTTTTTTAAAATCAAAATCAAACCAACCCAAA TATAGTCGGGTTTTTTTCGTTAATATCAAATCAAGTCAAA TCAAATCACTAGTCGAATT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)12 |
|---|---|
| PCR product (bp) | 124 |
| fwd primer | emg11L19/U |
| fwd primer seq. | ctggaccaagtgctattttgaccc |
| rev primer | emg11L19/L |
| rev primer seq. | cccgactatatttgggttggtttg |
| fluor. primer | emg11L19/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atggaccaagtgctattttgaccc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 131 | 131 |
| EPL-1 | 130 | 130 |
| LS1151 (S.linneanum) | 164 | 164 |
| LS1934 | 161 | 161 |
| LS4021 (S. incanum) | 153 | 153 |
| Nakate Shinkuro | 131 | 131 |
| Senryo 2 | 131 | 131 |
| Shironasu | 130 | 130 |
| WCGR112-8 | 130 | 130 |
| White Egg | 130 | 130 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.0 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.755 |
| LWAE2012 | E_06 | 43.379 |
| LWF2_2022 | E_06 | 41.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0243K06_SP6_378334 Chromat_file:LE_HBa_243_K06-SP6 SGN_GSS_ID:395545 (vector and quality trimmed) | 3e-41 |
| TomatoBAC_end | BLASTN | LE_HBa0242M05_T7_404556 Chromat_file:LE_HBa_242_M05-T7 SGN_GSS_ID:421750 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | SL_EcoRI0009A03_T7_226552 Chromat_file:SL_EcoRI_009_A03-T7 SGN_GSS_ID:243378 (vector and quality trimmed) | 3e-07 |
| TomatoBAC_end | BLASTN | SL_MboI0102O06_SP6_199626 Chromat_file:SL_MboI_102_O06-SP6 SGN_GSS_ID:216452 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
