| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 57.0 |
| Annotation | |
| Source Name | emg01B17 |
| Source Type | genomic |
| Source Sequence | TATTCCTAAGACAGCATTCAGGACCCGGTATGGGCATTAT GAATTCCGGGTTATGTCATTTGGGTTAACCAATGCTCCGG CAGTATTTATGGACCTTATGAACCGGGTATTTAAACCATT TCTGGATGTATTCGTCATTGTATTCATTGATGACATTTTG ATTTATTCTCGATCAGAGCAGGAGCAAGCAGATCATTTGC GCCGGGTACTCGGTGTTTTGCGCCATCAGAAGCTTTATGC TAAATTTTCTAAATGTGAGTTCTGGTTGTCTTCTGTTGCT TTCTTAGGCCTTGGAGGACAATGGGACTTGGAAGATAGTT AGACTGCCAAAAGGGAAGAACATTGTAGGGTGCAAATAGG TGTACAAAATCAAATACAAAGCTGATGGAGAAGTGGATAA TTCAAAGCCAGGTTGGTGGCTAAAGGCTATAACCAAACTG AAGGTATAGATTACCAGGAGACCTTCTCTCCAGTGGTAAA AATGAACACTGTTAGAACATTCCTAGCAATAGCTGCTTCT CAAAAATGGAATTTCTTCCTCCCTTTATCTTCTTTTCATT CGTTGTCCTCCTCATAGTGAGACTGCAAATATTTGGAGCT TTGAAAATGGCGAAAGGGAAGAAAGAGCTGCTAGCGTCAG CACCATGGAGGGTAGACCAAGAACAAGACGAAAAATTCAA AGACGCAAGGCTCAAAGTCACAAGTCAACCAGGTAAAACA CCCACTATGCACGTTCCTGGTAAAAAAAGCGTGAATTCCA AAGGCAATGAAGCAGATGATTCTCTTGAAATTGATCCTGA ACTTCGTTACAGCTTCCAACGTAACTTCCAGGTCCCTCTC TCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCCCCGTCTTTGTTATTTGTAGATGTTAG GGGCAGAGCCAGGTAGGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)3tac(tc)24 |
|---|---|
| PCR product (bp) | 246 |
| fwd primer | emg01B17/U |
| fwd primer seq. | gcaaggctcaaagtcacaagtcaa |
| rev primer | emg01B17/L |
| rev primer seq. | ggctctgcccctaacatctacaaa |
| fluor. primer | emg01B17/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acaaggctcaaagtcacaagtcaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 257 | 257 |
| EPL-1 | 251 | 251 |
| LS1151 (S.linneanum) | 211 | 211 |
| LS1934 | 227 | 227 |
| LS4021 (S. incanum) | 279 | 279 |
| Nakate Shinkuro | 251 | 251 |
| Senryo 2 | 251 | 255 |
| Shironasu | 227 | 227 |
| WCGR112-8 | 257 | 257 |
| White Egg | 227 | 227 |
| PI 286106 | 254 | 254 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 57.0 |
| ALF2 | AL06 | 62.3 |
| EW2009 | LG04 | 26.1 |
| LW2010 | E_06 | 60.9 |
| LWA2010 | LWA_06 | 59.643 |
| LWAE2012 | E_06 | 65.708 |
| LWF2_2022 | E_06 | 75.8 |
| N28F2 | E_06 | 91.5 |
| NAF2 | NA06 | 71.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0086A10_SP6_165218 Chromat_file:SL_MboI_86_A10-SP6 SGN_GSS_ID:182044 (vector and quality trimmed) | 1e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0053F05_T7_43641 Chromat_file:LE_HBa_053_F05-T7 SGN_GSS_ID:43641 (vector and quality trimmed) | 1e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0112F08_T7_36735 Chromat_file:LE_HBa_112_F08-T7 SGN_GSS_ID:36735 (vector and quality trimmed) | 1e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0086D12_SP6_23590 Chromat_file:LE_HBa_086_D12-SP6 SGN_GSS_ID:23590 (vector and quality trimmed) | 1e-14 |
| TomatoBAC_end | BLASTN | LE_HBa0009G22_T7_4171 Chromat_file:LE_HBa_009_G22-T7 SGN_GSS_ID:4171 (vector and quality trimmed) | 1e-14 |
| EST Name | Species | Strain |
|---|
