| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.6 |
| Annotation | |
| Source Name | emf21I08 |
| Source Type | genomic |
| Source Sequence | CTTGGTTTTCTAGAGAAAAGGTTTTCCAAAATATTTTGAC CAACCATAGGAAACTTGAAAAACAGTTCCCTCGTACCAAA CACGTTCTCAGAGCATTTTTACTTTCACATCTGACTAGTG ATTTAGGAAAGTAAGTGTTCCCTTTTCCTTCTTTCTGTTA CTGTTGTTTCTGGCCATTAGATAATACTTTTTCCCATTAG TTTTTGAGGGATTTTTCTATCCAAGGACCAAAAGTGTCCA CTCTTAATAACTAAAAGGATGTTCTTTATTCATATATATA TTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAAAACCAAAATACTTCTACAGCAATACTT AAGGGACTATTTTGTTTTTTTCCCCTCTATAGTGATTGTG CAAGATCACCTTTCTGACTGCCAAGAGAAATTAGAAGTTT ATGGAATCAATTGTTCTGTAACTTACTACTCTTCTCTAAT GGAAACTTATACCTGTTTCCTGAAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)4ttt(ag)24 |
|---|---|
| PCR product (bp) | 209 |
| fwd primer | emf21I08/U |
| fwd primer seq. | tctatccaaggaccaaaagtgtcca |
| rev primer | emf21I08/L |
| rev primer seq. | ttggcagtcagaaaggtgatcttg |
| fluor. primer | emf21I08/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-actatccaaggaccaaaagtgtcca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 212 | 212 |
| EPL-1 | 210 | 210 |
| LS1151 (S.linneanum) | 189 | 189 |
| LS1934 | 210 | 210 |
| LS4021 (S. incanum) | 202 | 202 |
| Nakate Shinkuro | 208 | 208 |
| Senryo 2 | 210 | 210 |
| Shironasu | 208 | 208 |
| WCGR112-8 | 208 | 208 |
| White Egg | 212 | 212 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.6 |
| EW2009 | LG04 | 71.2 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.954 |
| LWAE2012 | E_06 | 43.55 |
| LWF2_2022 | E_06 | 41.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0011L15_T7_5654 Chromat_file:LE_HBa_011_L15-T7 SGN_GSS_ID:5654 (vector and quality trimmed) | 1e-06 |
| EST Name | Species | Strain |
|---|
