| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.6 |
| Annotation | |
| Source Name | emf21C11 |
| Source Type | genomic |
| Source Sequence | GGTCATCCTTCAACACTTTTCCACGGCATATGAGCCGTTG TTGTTCTGTCAAGACACCTGTAACTGTGGCAATTTGTTCC TTCAATGCAGGAACTGGTACCTGTATTGGAATTGACAACA GGTATTAGAAAGAATTTTAGAATATTATAAAAGTCAAAAC AGATGATACTACAGTCAACCTTTAAATTCTTTTGATACTA CAGTCAACCTTTAAATTGTCAGTTAAAGAGCATGATTGGT CTTTGTAATTGTGCTCCCATATCCAACAAGGATGCACATT TGCAACTTACAGATACAGAAAACTGGTTGGAGCCATGATT ACTTGAAATTCTAGTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCCCTTTTTTTTGGGGAGAT TAGTACTTGAAATTCTACTTTTTGAAGAAGTATATAAACA AATTACAAATAGAACAATCGGCCTTGATGTTTTTATTGTT CCGCCTGTTTGATAGGTAGCATAGCTCAAGAGGGAAGAAC CGATTAAAGAAGGATGATTTGAATTCCTCCCAAAGCACCA CATGGCCATTACCCTTCTCATCCTTCCATCGATCAAACTA AATTTAAGCCACCCCTTTGAGTTAGTACGCCGCCAACTCC ACTTTTTCATTTGGTCCAACACCCATGATAGATAAGATTT TTAGATTTCATCAATAAATTCTTATGGATCTTCATCCACC TTTGACCCATGAAAAATCAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)24 |
|---|---|
| PCR product (bp) | 199 |
| fwd primer | emf21C11/U |
| fwd primer seq. | tggttggagccatgattacttgaa |
| rev primer | emf21C11/L |
| rev primer seq. | atgctacctatcaaacaggcggaa |
| fluor. primer | emf21C11/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-aggttggagccatgattacttgaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 205 | 205 |
| EPL-1 | 205 | 205 |
| LS1151 (S.linneanum) | 199 | 199 |
| LS1934 | 203 | 203 |
| LS4021 (S. incanum) | 203 | 203 |
| Nakate Shinkuro | 213 | 213 |
| Senryo 2 | 205 | 205 |
| Shironasu | 211 | 211 |
| WCGR112-8 | 201 | 201 |
| White Egg | 199 | 199 |
| PI 286106 | 206 | 206 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.6 |
| EW2009 | LG04 | 71.2 |
| LW2010 | E_06 | 35.7 |
| LWA2010 | LWA_06 | 36.999 |
| LWAE2012 | E_06 | 43.602 |
| LWF2_2022 | E_06 | 41.9 |
| N28F2 | E_06 | 49.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0044N02_T7_143080 Chromat_file:LE_HBa_044_N02-T7 SGN_GSS_ID:159911 (vector and quality trimmed) | 1e-56 |
| TomatoBAC_end | BLASTN | SL_MboI0025A21_T7_216969 Chromat_file:SL_MboI_25_A21-T7 SGN_GSS_ID:233795 (vector and quality trimmed) | 7e-06 |
| EST Name | Species | Strain |
|---|
