| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 42.0 |
| Annotation | |
| Source Name | emf11A03 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN NNNNNNNNNNNNNNNNNNNNCTACTGTTCTCCATTATGTT TAAGGGTCTTTAAACTGATATATATAAATACAATAATAAC ATATTTTGTGAAATTTCACAAGTATGATATGAAAGAATAA AGTGTACACAGATTTTATTACTATTTCATAAAGATAGATA AATTATTTTTCAAAGACCCTAGACTTAAATGCATCCATTC CAAGTAAAAGAAGACCAAAAGATATATATATAACATAGAA ACTACAAGAAAAATAACAATAAGATAGCAAAATAATGTGA TAATCGAAAAGTAATGACTGGCACAACTAGCCCTATGACA AACCTTAAATTGTTACAAGACAAAACAACATTCTACCCAA CTATCCTTCCATTCTAATACATTATTTTCACTTTCTTTTT ATTTACGGTCATGTCTTTGGTATTAAGTTGCACCCTATTC CTATCTAATCATCTCTCCCAAAAATTTTTACACACNNNNN CACACATATATATATATATATATATATATATATATATATA TATTACCCTTATGTATAAGCCAACACGATGAAGTACGAAC ACAACTTTACAAAGTTGTACCAATAGCATAGAAAATTGTA CTACATCATCCATTACTCTTATATGTTGATAAATAAGCAC GTGTATTACATGTGTCCTTGCAGATCCTCCTCCGATTTTC AATTGTTTTGCTTAGATTTTTCAGTCGATTTTTCATCTTT CGTGTTTCTCTTTAGTTGTTACAAAAAATTCACACTTAAT TGAGGGTTCGGAAAAGAAACTCATAAATAGAGGGAGAAAA AATTGATGTAAAATTAGAGAAGAATGATTTGAGGTTCGAG NNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)3ccaaaaattttt(ac)3nnnnn(ca)3(ta)18 |
|---|---|
| PCR product (bp) | 217 |
| fwd primer | emf11A03/U |
| fwd primer seq. | caacattctacccaactatccttcca |
| rev primer | emf11A03/L |
| rev primer seq. | gtgttcgtacttcatcgtgttggc |
| fluor. primer | emf11A03/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atacattctacccaactatccttcca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 240 | 240 |
| EPL-1 | 239 | 239 |
| LS1151 (S.linneanum) | 212 | 212 |
| LS1934 | 214 | 214 |
| LS4021 (S. incanum) | 235 | 235 |
| Nakate Shinkuro | 239 | 239 |
| Senryo 2 | 247 | 247 |
| Shironasu | 214 | 214 |
| WCGR112-8 | 236 | 236 |
| White Egg | 214 | 214 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 42.0 |
| EW2009 | LG04 | 50.4 |
| LWA2010 | LWA_06 | 40.885 |
| LWAE2012 | E_06 | 47.487 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
