| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.6 |
| Annotation | |
| Source Name | emf01J09 |
| Source Type | genomic |
| Source Sequence | GTTTAAGCCTTGCTAGCAGAAGCCTCACTCGTTTTGAAAT TAAGGGATAAAAGGTTATTGCACACATAGACAACAAACCA GACTATACTAAAAGAGAGATTAGTCGGAAACATCATATTC TTTATCCAATCTCACAGAAGGCGAATATCCTCTAGCTTTT TTATGAAAAGTATAGGTGTCTCTGTACTATTCCGCAAGAC TCTATTAGATTTATTTTTATACAATGAGATCAATGAAACA AAGCTTTGATACCAATTTTGTCACAGTCCCAAATAGAATG TGAGTAGCACCCACACTAAACCTTGGGAGAACTAATACTT TAATCCAACCACCAGAATAATATAATTCACACAAATTTTA AATTACGGAAGCAAATTTAAATAAGTAAAACAAGTTGAGT TTCCATAAACTTAAATAGAAACTTAACAACATAAAATATT GTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAAAGAGAGAGAAAGGGATCCAACCCTGAGAATT CATAATAAGGTAAAGTCTAAGAGTGTCTATTTCTGAACAA TGGACCAAGAAGTGAATTTGAATCTAGGTAGCCTGAACAA GCTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)8(ag)16aa(ag)4 |
|---|---|
| PCR product (bp) | 293 |
| fwd primer | emf01J09/U |
| fwd primer seq. | gtagcacccacactaaaccttggg |
| rev primer | emf01J09/L |
| rev primer seq. | ttcacttcttggtccattgttcaga |
| fluor. primer | emf01J09/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atagcacccacactaaaccttggg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 302 | 302 |
| EPL-1 | 293 | 293 |
| LS1151 (S.linneanum) | 280 | 280 |
| LS1934 | 289 | 289 |
| LS4021 (S. incanum) | 286 | 286 |
| Nakate Shinkuro | 302 | 302 |
| Senryo 2 | 302 | 304 |
| Shironasu | 304 | 304 |
| WCGR112-8 | 303 | 303 |
| White Egg | 293 | 293 |
| PI 286106 | 300 | 300 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.6 |
| EW2009 | LG04 | 66.4 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.965 |
| LWAE2012 | E_06 | 43.561 |
| LWF2_2022 | E_06 | 41.9 |
| N28F2 | E_06 | 53.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0026P03_T7_232331 Chromat_file:SL_EcoRI_026_P03-T7 SGN_GSS_ID:249157 (vector and quality trimmed) | 9e-08 |
| EST Name | Species | Strain |
|---|
