| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 38.6 |
| Annotation | |
| Source Name | emf01I12 |
| Source Type | genomic |
| Source Sequence | CTCTCCATGCAAAAAGGAACTTTTTTATATCCAATTGATG AAGTGTTCAATGGCATATTGCTCTAAGGAGATGAGTCGTT GAAAAGATGCAATTTTGGTAAATGGAGAGAACGTTTCACC ATAATCAAGGTCATAAATCTGTGTATATCTTTCGTTCGAC AAGGTGAGCCTGTGGGAACAAAAGTCATCAATTGCTACAA GTTTGTAGCAATGTCAAAAGTACTTTAAATTAGTTTGCCT ATAAGTTTGATTTGTCAAAATTGTTAGGGAAGGGAAAGTC TAAGAAGTTAGGCATAAGTTTGACACCATCTTTGTCAAAC CAAATCTCACTTACAAACCTACCAAGGTTTGAAATATTGG TTTGTTATGATGTTATTGATGACATAAATAGAGGTAAAAA AAAATTATAAATATGAGAGTTTTGCTCATTTTGTAAAAAC ACCAAAATATAGAGAGCAATAGAAAGAAGAGAGAGTAATC CACAAACTATTCTTAGTTTGTGAGAAAAATAACGTGGGAG TAAAATTGTAGCAAATTTGTATGAAATAAAAGAGTGTTTT TATACAAAGAAGAGTTGTTTTTTTAACACTATCAAGTTGT CATCAATACTATTATATCACATGTACTCCAGTGTAATATT TGGTGACGTTACTCTCTTGTAATTGCTACTTAGCGTGAAT ATTATTCTGGACGTGATTATTATTTTTCCCAACAACGTGG TATCAGAGCCATAGCAAATAATAGTCCACTATCCTTTCAA TACCCCCATCTCACAAGAGAAAATTATGAAAAATGGTGTC TACGAATGAAAGTCATTCTTGGCTCTCAAGATGTTTGGGA CATTGTAGACAAAGCGTATACAAAACCTGTTAATGAAGAA ACTTTGTCCCAAAATGAAAAGGGGATCTAGTTAAAGACAA GAAAGAAAGATCAACAAGCCCTCACTCTCATCCATCAGTG TTTGGATGATGGCATGTTTGAGAAGGTGGCTGATGCAACC ACCTCAAAAGAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3caatagaaaga(ag)4 |
|---|---|
| PCR product (bp) | 230 |
| fwd primer | emf01I12/U |
| fwd primer seq. | ggcataagtttgacaccatctttgtc |
| rev primer | emf01I12/L |
| rev primer seq. | ctcccacgttatttttctcacaaac |
| fluor. primer | emf01I12/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-agcataagtttgacaccatctttgtc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 231 | 231 |
| EPL-1 | 230 | 230 |
| LS1151 (S.linneanum) | 212 | 212 |
| LS1934 | 229 | 229 |
| LS4021 (S. incanum) | 232 | 232 |
| Nakate Shinkuro | 231 | 231 |
| Senryo 2 | 231 | 231 |
| Shironasu | 231 | 231 |
| WCGR112-8 | 231 | 231 |
| White Egg | 231 | 231 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 38.6 |
| LW2010 | E_06 | 35.6 |
| LWA2010 | LWA_06 | 36.914 |
| LWAE2012 | E_06 | 43.516 |
| LWF2_2022 | E_06 | 41.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0015I02_SP6_129783 Chromat_file:LE_HBa_015_I02-SP6 SGN_GSS_ID:146614 (vector and quality trimmed) | 7e-87 |
| TomatoBAC_end | BLASTN | LE_HBa0019J21_T7_132174 Chromat_file:LE_HBa_019_J21-T7 SGN_GSS_ID:149005 (vector and quality trimmed) | 2e-77 |
| TomatoBAC_end | BLASTN | LE_HBa0037J15_SP6_80716 Chromat_file:LE_HBa_037_J15-SP6 SGN_GSS_ID:80716 (vector and quality trimmed) | 9e-77 |
| TomatoBAC_end | BLASTN | SL_MboI0019P17_T7_216550 Chromat_file:SL_MboI_19_P17-T7 SGN_GSS_ID:233376 (vector and quality trimmed) | 2e-56 |
| TomatoBAC_end | BLASTN | LE_HBa0043N07_SP6_93948 Chromat_file:LE_HBa_043_N07-SP6 SGN_GSS_ID:93948 (vector and quality trimmed) | 3e-52 |
| EST Name | Species | Strain |
|---|
