| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 18.7 |
| Annotation | |
| Source Name | emf01A03 |
| Source Type | genomic |
| Source Sequence | CTCATTATAGCCTATTATAGTTGTGATGATGGTTAGTTAA ATGTGTAGTTAGTGAATTAGTTAGTTAGTTAAATGTTAGT TGGAGAAGGATTAGGAAGATATCCCAGGTGTGTGTACACA TGGTAGTTAGAATGGACCTTCATTAATATATATATATATA TATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TACTGTGCAGAGAGAAGTAATACACTACAATACTTCTTCC TCTTCTTCAATCCTCTTCTCTATGACCTCTCCCTCTTCAA TTCTCTTCATGATATCAGAGCGGGAGTGAGGCATTTCGAT TTCTCAGCTCAATTGATCAAGTATTCGTAGAAATTGACTC AATTTGATAGCAGTAATGGCAGATTCAGCTACCAATA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)10(tg)17tactgtgc(ag)3 |
|---|---|
| PCR product (bp) | 248 |
| fwd primer | emf01A03/U |
| fwd primer seq. | tggagaaggattaggaagatatccca |
| rev primer | emf01A03/L |
| rev primer seq. | gctgagaaatcgaaatgcctcact |
| fluor. primer | emf01A03/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-aggagaaggattaggaagatatccca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 241 | 241 |
| EPL-1 | 251 | 251 |
| LS1151 (S.linneanum) | 246 | 246 |
| LS1934 | 237 | 241 |
| LS4021 (S. incanum) | 214 | 259 |
| Nakate Shinkuro | 241 | 241 |
| Senryo 2 | 241 | 241 |
| Shironasu | 237 | 237 |
| WCGR112-8 | 239 | 239 |
| White Egg | 237 | 237 |
| PI 286106 | 237 | 237 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 18.7 |
| EW2009 | LG04 | 92.3 |
| LW2010 | E_06 | 13.6 |
| LWA2010 | LWA_06 | 15.432 |
| LWAE2012 | E_06 | 21.228 |
| LWF2_2022 | E_06 | 16.7 |
| N28F2 | E_06 | 2.7 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
