| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 65.2 |
| Annotation | |
| Source Name | eme07H07 |
| Source Type | genomic |
| Source Sequence | CCAGGACTAATGTAATCCAGTAGGTCTGACACACTACATA AGAAAGTAAAGAGTTTTGGTTCCTTAGATGCAAGCAGATA GCTCAAGCCCTAGTAACACCAATTCAAAAAAATATCAATA CCTGAGATGACCTTTGCAAGCAATGGACGCATCTAGTCTC GGAGCTCCTGTTCTTGCAGCTTCTTGTTGCTCTAAGGCTT TCGATTCAAAGTATTCAAGCCATGCAGCAGCATCCTACAT ATATATTGCATGTGAAATCTCCAACTTTAAAATACAGCAA CAGATAGGTGGTTTATTAAGAAGACCCAAGTCATTTATTA TCTTCTATTAAGGAGGACCCCTCATTGTTACTGGGAAATG CCCAATGTATAACAAAAATAAAAGGCGTATGTCATTTGCT GAATACATTTTCTTTTTTTTTAAAAAAAAGCGCCACGATG CAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGACAGAGA GACAGAGACAGAGACAGAGACAGAGACAGAGAGTTATCCG CAGCGTCATAATATTTTAACTGTTGAAGCATTCGGGAAAA GAATGAGATATGAAATACACTGTTGAACCATCGTGGTAAA TTAATAAAGACGGAAATCAGGCATTAGATTTGTACACACC TGAGTACGGAGATCATCTGCTCCTAATTTTGCTTGAAGAA TCTGCAATGTAGTCTGCTCATGTTGCACACTCAGTGAATA TGCTTCCATGAGAGAAAGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)6g(ga)10c(ag)3 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme07H07/U |
| fwd primer seq. | ttgttactgggaaatgcccaatgt |
| rev primer | eme07H07/L |
| rev primer seq. | cattcttttcccgaatgcttcaac |
| fluor. primer | eme07H07/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-ATTGTTACTGGGAAATGCCCAATGT |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 235 | 235 |
| EPL-1 | 226 | 226 |
| LS1151 (S.linneanum) | 222 | 222 |
| LS1934 | 226 | 226 |
| LS4021 (S. incanum) | 219 | 219 |
| Nakate Shinkuro | 226 | 226 |
| Senryo 2 | 226 | 226 |
| Shironasu | 226 | 226 |
| WCGR112-8 | 226 | 226 |
| White Egg | 228 | 228 |
| PI 286106 | 228 | 228 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 65.2 |
| ALF2 | AL06 | 70.9 |
| LWA2010 | LWA_06 | 68.472 |
| LWAE2012 | E_06 | 74.088 |
| N28F2 | E_06 | 105.0 |
| NAF2 | NA06 | 86.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
