| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 39.9 |
| Annotation | |
| Source Name | eme01C08 |
| Source Type | genomic |
| Source Sequence | ATCTGCTTCACACTCCCCTCACCGCACCACCCTCAACAGC CGCCTCTCTCTCTCTCCACAATGACCATCGCTTCTCTTCC TCCCTACCCTCTCCGATCTCCTCCCTCACGCCATCTCCTC CACCAGTAGACAACAACCATCTGACCCCTCTGCTTTCACG CCGGAACCAGCCGCACCACAATTCCAACACCACCCAGCAA CCCTCCTCGTCGGAAAACCCACAAAACCCAAACGACCATA GCCATGGCTGCCGACAACTGTCGGCGACCTTCACCCTTTC ACCATCCCAAACCAGTAGCCCCAGCAGCAACCAAACGACC TTTGCATGAAAATTCTTGTAACAAGTGAAGTGATTTCGGG CGAAACAAACCTCGATGTTGGACGATTTCGGTAAACTTTG AATGGAAATTCATCTGGTATGTTGCTCTAGTGCCTTTTTG GTGTTAATTAATTTCCAGATTTCGAGGTTTGCTACTGTTT ATGGCTCTAGTTCTAGAATTCAAAATGCTTAATTGTTCAT CTTTTCTATTTATTTCACCGAATTAGACCTATGTGACTGT TGTGCTAAAAGGTCATTGATTTGCATTGCTTCTCATTATT TTAATTTTGAACGTCAGAAAAGTTGAGTTTTCAATTTTGT GATGCTGATATTTTTTGGTTGATTTACTTGAAGCTCGGCT CCCCTAATTTGATTTATTATCCTTAATTAGTGGGAGGAGA TATTCCATTG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)6 |
|---|---|
| PCR product (bp) | 151 |
| fwd primer | eme01C08/U |
| fwd primer seq. | atctgcttcacactcccctcacc |
| rev primer | eme01C08/L |
| rev primer seq. | agaggggtcagatggttgttgtct |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 254 | 170 |
| EPL-1 | 155 | 171 |
| LS1151 (S.linneanum) | 154 | 154 |
| LS1934 | 155 | 171 |
| LS4021 (S. incanum) | 155 | 155 |
| Nakate Shinkuro | 155 | 171 |
| Senryo 2 | 155 | 171 |
| Shironasu | ||
| WCGR112-8 | 155 | 171 |
| White Egg | 155 | 170 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 39.9 |
| LWA2010 | LWA_06 | 38.605 |
| LWAE2012 | E_06 | 45.193 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
