| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_06 |
| Marker Type | SSR |
| Map Position | 47.6 |
| Annotation | |
| Source Name | PED06H13C |
| Source Type | EST |
| Source Sequence | GGGGGCAACTTTCTTCATGCATCTTTTTTTTTTTTTCCCA TTATTCACTTACTTAAATAAGAATAAAGCTTGAACCGCAA ATTGTCCTTTACTTTTTATTTTTTTCTCCATTTTGCTTAC TTTTCTCTCTCTCTAATGGAGCAGTCAGAGAGCTCAACGA CCCACGTTCACCAGGAACCAGAAGAAGAACCAAACGCGAC CGATCAGTTAACGCTTCCACCCTGTTTAACACCTGAAGAA TCCGATGAGCTCAAATCAAGTGTAACCGAGTTCCACGCCT ACCGAGTGAACTCATCCCAATGCTCTTCCCTACTCGCACA ATGCATCCACGCGCCACCTAACGTAGTCTGGTCCATCGTC CGCCGTTTCGAAAGCCTNNNNNCGTCTTTTTGCTGATACA GTTGTGAAATTAAATCTTCAGAAATTAGCCTCCGTTGCTG AAGCTATAGCTCGTGGAGGTAACGGTGAGATTTCATAAAA GTTCAAGTTGATTTTTCTCTTCATCTTAATTTTCTTTCTT TTTCCATATAGCTCCCCTTTTTTGGATTTATGTATTTGGC TGAAATGTTGTGTTTCTAAAAGGATTCACGGAAGAGAACG ACAACCATATCCTTCACCCCTTCAGTTTGATTTTATTTGC GTTATTATTCAATCATAATCCTACTTTATTAGAC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)5taatggagcagtc(ag)3ctcaacgacccacgttcaccaggaacca(gaa)3 |
|---|---|
| PCR product (bp) | 250 |
| fwd primer | ecm074/U |
| fwd primer seq. | gggcaactttcttcatgcatcttt |
| rev primer | ecm074/L |
| rev primer seq. | gagctcatcggattcttcaggtgt |
| fluor. primer | ecm074/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-aggcaactttcttcatgcatcttt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 252 | 252 |
| EPL-1 | 253 | 253 |
| LS1151 (S.linneanum) | 253 | 253 |
| LS1934 | 253 | 253 |
| LS4021 (S. incanum) | 252 | 252 |
| Nakate Shinkuro | 253 | 253 |
| Senryo 2 | 251 | 251 |
| Shironasu | 251 | 251 |
| WCGR112-8 | 253 | 253 |
| White Egg | 252 | 252 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_06 | 47.6 |
| ALF2 | AL06 | 53.2 |
| LWA2010 | LWA_06 | 46.785 |
| LWAE2012 | E_06 | 52.747 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
